Hb_004724_140

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig4724: 120939-126424
Sequence    

Annotation

kegg
ID tcc:TCM_034252
description Leucine-rich receptor-like protein kinase family protein
nr
ID XP_012073772.1
description PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
swissprot
ID Q9SYQ8
description Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3
trembl
ID A0A067KPG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08194 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor protein kinase clavata1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44338: 120936-124079 , PASA_asmbl_44340: 124480-124612 , PASA_asmbl_44341: 125121-125551 , PASA_asmbl_44342: 125604-125922
cDNA
(Sanger)
(ID:Location)		 004_B09.ab1: 120936-123714 , 038_M16.ab1: 120936-123694 , 041_E05.ab1: 120936-123616

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_140 0.0 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
2 Hb_001623_240 0.1011880537 - - hypothetical protein VITISV_004933 [Vitis vinifera]
3 Hb_003777_180 0.108896613 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
4 Hb_002529_100 0.111688839 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
5 Hb_004116_080 0.1183790284 - - ATATH9, putative [Ricinus communis]
6 Hb_011931_050 0.1216598221 - - fk506-binding protein, putative [Ricinus communis]
7 Hb_001341_130 0.1231394907 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000041_080 0.1232996718 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_000261_510 0.1237214402 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
10 Hb_002681_040 0.1248724644 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
11 Hb_000521_150 0.1256376376 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
12 Hb_001109_120 0.1262228131 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
13 Hb_000045_190 0.126420577 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
14 Hb_000481_020 0.1271776902 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
15 Hb_001153_080 0.1275059309 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
16 Hb_003581_090 0.1295635665 - - PREDICTED: galactose oxidase [Jatropha curcas]
17 Hb_003226_150 0.1302855046 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
18 Hb_000926_290 0.1321578189 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000316_110 0.1327296174 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
20 Hb_002447_030 0.1340724859 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]

Gene co-expression network

sample Hb_004724_140 Hb_004724_140 Hb_001623_240 Hb_001623_240 Hb_004724_140--Hb_001623_240 Hb_003777_180 Hb_003777_180 Hb_004724_140--Hb_003777_180 Hb_002529_100 Hb_002529_100 Hb_004724_140--Hb_002529_100 Hb_004116_080 Hb_004116_080 Hb_004724_140--Hb_004116_080 Hb_011931_050 Hb_011931_050 Hb_004724_140--Hb_011931_050 Hb_001341_130 Hb_001341_130 Hb_004724_140--Hb_001341_130 Hb_001623_240--Hb_011931_050 Hb_001623_240--Hb_002529_100 Hb_004607_140 Hb_004607_140 Hb_001623_240--Hb_004607_140 Hb_000163_200 Hb_000163_200 Hb_001623_240--Hb_000163_200 Hb_000699_110 Hb_000699_110 Hb_001623_240--Hb_000699_110 Hb_000481_020 Hb_000481_020 Hb_003777_180--Hb_000481_020 Hb_000329_040 Hb_000329_040 Hb_003777_180--Hb_000329_040 Hb_000412_110 Hb_000412_110 Hb_003777_180--Hb_000412_110 Hb_002681_020 Hb_002681_020 Hb_003777_180--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_003777_180--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_003777_180--Hb_006569_020 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_004116_080--Hb_000045_190 Hb_000046_260 Hb_000046_260 Hb_004116_080--Hb_000046_260 Hb_003018_120 Hb_003018_120 Hb_004116_080--Hb_003018_120 Hb_004116_080--Hb_000798_030 Hb_000160_130 Hb_000160_130 Hb_004116_080--Hb_000160_130 Hb_000188_130 Hb_000188_130 Hb_004116_080--Hb_000188_130 Hb_070986_010 Hb_070986_010 Hb_011931_050--Hb_070986_010 Hb_000316_110 Hb_000316_110 Hb_011931_050--Hb_000316_110 Hb_000061_330 Hb_000061_330 Hb_011931_050--Hb_000061_330 Hb_011931_050--Hb_000045_190 Hb_000634_050 Hb_000634_050 Hb_011931_050--Hb_000634_050 Hb_001341_130--Hb_000188_130 Hb_001153_080 Hb_001153_080 Hb_001341_130--Hb_001153_080 Hb_001341_130--Hb_000045_190 Hb_001341_130--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_001341_130--Hb_003581_090 Hb_002759_230 Hb_002759_230 Hb_001341_130--Hb_002759_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4573 3.04185 2.91898 5.51419 12.6152 11.7184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.5682 28.7093 11.2061 4.21988 3.32401

CAGE analysis