Hb_000699_110

Information

Type -
Description -
Location Contig699: 77338-80198
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04180g
description POPTRDRAFT_834543; hypothetical protein
nr
ID XP_002319096.2
description hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I5M0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04180g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54679: 79828-80070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_110 0.0 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
2 Hb_025246_010 0.1046927718 - - -
3 Hb_001623_240 0.1128677221 - - hypothetical protein VITISV_004933 [Vitis vinifera]
4 Hb_000261_510 0.1189498808 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
5 Hb_000175_040 0.1209976325 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
6 Hb_003057_050 0.1229866708 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
7 Hb_004724_140 0.1351681925 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
8 Hb_001109_120 0.1360736629 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
9 Hb_004607_140 0.1452282368 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
10 Hb_002518_250 0.1459515625 - - conserved hypothetical protein 10 [Hevea brasiliensis]
11 Hb_003057_130 0.1476593224 - - -
12 Hb_011931_050 0.1480284436 - - fk506-binding protein, putative [Ricinus communis]
13 Hb_019033_010 0.1496127244 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
14 Hb_002301_290 0.1500062636 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
15 Hb_004787_090 0.1535411393 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
16 Hb_002226_030 0.1553215687 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
17 Hb_005271_170 0.1559406428 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
18 Hb_000041_080 0.1582570329 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
19 Hb_002447_030 0.1591256307 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
20 Hb_005892_060 0.1598561969 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000699_110 Hb_000699_110 Hb_025246_010 Hb_025246_010 Hb_000699_110--Hb_025246_010 Hb_001623_240 Hb_001623_240 Hb_000699_110--Hb_001623_240 Hb_000261_510 Hb_000261_510 Hb_000699_110--Hb_000261_510 Hb_000175_040 Hb_000175_040 Hb_000699_110--Hb_000175_040 Hb_003057_050 Hb_003057_050 Hb_000699_110--Hb_003057_050 Hb_004724_140 Hb_004724_140 Hb_000699_110--Hb_004724_140 Hb_003057_130 Hb_003057_130 Hb_025246_010--Hb_003057_130 Hb_025246_010--Hb_003057_050 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190 Hb_011931_050 Hb_011931_050 Hb_001623_240--Hb_011931_050 Hb_002529_100 Hb_002529_100 Hb_001623_240--Hb_002529_100 Hb_004607_140 Hb_004607_140 Hb_001623_240--Hb_004607_140 Hb_001623_240--Hb_004724_140 Hb_000163_200 Hb_000163_200 Hb_001623_240--Hb_000163_200 Hb_000261_510--Hb_004724_140 Hb_003226_150 Hb_003226_150 Hb_000261_510--Hb_003226_150 Hb_000261_510--Hb_025246_010 Hb_002681_020 Hb_002681_020 Hb_000261_510--Hb_002681_020 Hb_000261_510--Hb_000984_190 Hb_000175_040--Hb_003057_130 Hb_000175_040--Hb_025246_010 Hb_000788_120 Hb_000788_120 Hb_000175_040--Hb_000788_120 Hb_007625_020 Hb_007625_020 Hb_000175_040--Hb_007625_020 Hb_004502_080 Hb_004502_080 Hb_000175_040--Hb_004502_080 Hb_003057_050--Hb_004607_140 Hb_017895_050 Hb_017895_050 Hb_003057_050--Hb_017895_050 Hb_004117_290 Hb_004117_290 Hb_003057_050--Hb_004117_290 Hb_000617_320 Hb_000617_320 Hb_003057_050--Hb_000617_320 Hb_000479_180 Hb_000479_180 Hb_003057_050--Hb_000479_180 Hb_003777_180 Hb_003777_180 Hb_004724_140--Hb_003777_180 Hb_004724_140--Hb_002529_100 Hb_004116_080 Hb_004116_080 Hb_004724_140--Hb_004116_080 Hb_004724_140--Hb_011931_050 Hb_001341_130 Hb_001341_130 Hb_004724_140--Hb_001341_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.05377 0.672706 1.24325 0.896106 5.38437 5.49188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2116 7.57795 2.50132 1.448 1.56606

CAGE analysis