Hb_002835_220

Information

Type -
Description -
Location Contig2835: 199542-202266
Sequence    

Annotation

kegg
ID vvi:100243357
description MATE efflux family protein 7
nr
ID XP_002277527.1
description PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
swissprot
ID Q9SIA1
description MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2
trembl
ID B9RAU8
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1508810 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_220 0.0 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
2 Hb_007741_040 0.1697657215 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
3 Hb_000567_280 0.185487657 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
4 Hb_003777_230 0.1929289339 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
5 Hb_000005_030 0.1936343732 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
6 Hb_001631_080 0.1998802114 - - PREDICTED: importin-5-like [Populus euphratica]
7 Hb_000526_020 0.2036442884 - - thioredoxin-like family protein [Hevea brasiliensis]
8 Hb_002233_110 0.2042548312 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
9 Hb_000861_050 0.2061822051 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
10 Hb_002301_240 0.2069021155 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
11 Hb_019033_010 0.2070746608 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
12 Hb_001266_050 0.2073793493 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
13 Hb_004502_080 0.2080628241 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
14 Hb_000052_010 0.2090871499 - - hypothetical protein M569_08416, partial [Genlisea aurea]
15 Hb_000091_100 0.2096487258 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_004787_090 0.2113445927 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
17 Hb_004055_060 0.2137461505 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
18 Hb_000699_110 0.2141115243 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
19 Hb_003023_050 0.2148081812 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
20 Hb_010166_020 0.2151856554 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002835_220 Hb_002835_220 Hb_007741_040 Hb_007741_040 Hb_002835_220--Hb_007741_040 Hb_000567_280 Hb_000567_280 Hb_002835_220--Hb_000567_280 Hb_003777_230 Hb_003777_230 Hb_002835_220--Hb_003777_230 Hb_000005_030 Hb_000005_030 Hb_002835_220--Hb_000005_030 Hb_001631_080 Hb_001631_080 Hb_002835_220--Hb_001631_080 Hb_000526_020 Hb_000526_020 Hb_002835_220--Hb_000526_020 Hb_010166_020 Hb_010166_020 Hb_007741_040--Hb_010166_020 Hb_007741_040--Hb_003777_230 Hb_002492_020 Hb_002492_020 Hb_007741_040--Hb_002492_020 Hb_004055_060 Hb_004055_060 Hb_007741_040--Hb_004055_060 Hb_003050_070 Hb_003050_070 Hb_007741_040--Hb_003050_070 Hb_000567_280--Hb_003050_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_000091_100 Hb_000091_100 Hb_000567_280--Hb_000091_100 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_000052_010 Hb_000052_010 Hb_003777_230--Hb_000052_010 Hb_000603_210 Hb_000603_210 Hb_003777_230--Hb_000603_210 Hb_003777_230--Hb_010166_020 Hb_001007_050 Hb_001007_050 Hb_003777_230--Hb_001007_050 Hb_003777_230--Hb_004055_060 Hb_000005_030--Hb_000526_020 Hb_006816_440 Hb_006816_440 Hb_000005_030--Hb_006816_440 Hb_003038_180 Hb_003038_180 Hb_000005_030--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_000005_030--Hb_000062_580 Hb_149683_010 Hb_149683_010 Hb_000005_030--Hb_149683_010 Hb_000184_180 Hb_000184_180 Hb_000005_030--Hb_000184_180 Hb_048141_010 Hb_048141_010 Hb_001631_080--Hb_048141_010 Hb_003540_230 Hb_003540_230 Hb_001631_080--Hb_003540_230 Hb_005450_010 Hb_005450_010 Hb_001631_080--Hb_005450_010 Hb_010578_090 Hb_010578_090 Hb_001631_080--Hb_010578_090 Hb_124315_040 Hb_124315_040 Hb_001631_080--Hb_124315_040 Hb_001631_070 Hb_001631_070 Hb_001631_080--Hb_001631_070 Hb_000526_020--Hb_000062_580 Hb_001266_050 Hb_001266_050 Hb_000526_020--Hb_001266_050 Hb_000526_020--Hb_000052_010 Hb_000526_020--Hb_003038_180 Hb_000526_020--Hb_000184_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.574928 0.0127233 0.039097 0.0675827 0.392561 0.33464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59236 0.96248 0.172606 0.146238 0

CAGE analysis