Hb_001741_090

Information

Type rubber biosynthesis
Description Gene Name: SRPP1
Location Contig1741: 118045-120012
Sequence    

Annotation

kegg
ID rcu:RCOM_1433280
description Rubber elongation factor protein, putative
nr
ID O82803.1
description RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
swissprot
ID O82803
description Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1
trembl
ID F8SKC3
description Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=2 SV=1
Gene Ontology
ID GO:0005737
description small rubber particle protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16596: 118055-119949 , PASA_asmbl_16597: 118210-119927 , PASA_asmbl_16598: 118169-119927 , PASA_asmbl_16599: 119050-119927 , PASA_asmbl_16600: 118169-119927
cDNA
(Sanger)
(ID:Location)		 001_D08.ab1: 118169-119784 , 002_E12.ab1: 118171-119773 , 002_H06.ab1: 118194-119755 , 002_K17.ab1: 118171-119784 , 002_O14.ab1: 118169-119695 , 004_B14.ab1: 118169-119756 , 004_H10.ab1: 118171-119784 , 004_J14.ab1: 118171-119777 , 004_O23.ab1: 118169-119782 , 005_K14.ab1: 118169-119782 , 006_A23.ab1: 118171-119645 , 006_C23.ab1: 118169-119701 , 007_L11.ab1: 118171-119782 , 007_O08.ab1: 118169-119707 , 008_I07.ab1: 118171-119661 , 008_K24.ab1: 118169-119798 , 009_B04.ab1: 118169-119624 , 009_K16.ab1: 118169-119774 , 009_M11.ab1: 118169-119735 , 010_B04.ab1: 118169-119735 , 010_C10.ab1: 118169-119780 , 010_G05.ab1: 118169-119739 , 011_B23.ab1: 118169-119782 , 011_I18.ab1: 118169-119784 , 012_N02.ab1: 118169-119779 , 013_F14.ab1: 118169-119702 , 013_K20.ab1: 118169-119750 , 014_C07.ab1: 118169-119776 , 014_I09.ab1: 118169-119734 , 014_P13.ab1: 118169-119779 , 015_E21.ab1: 118169-119688 , 015_F04.ab1: 118170-119702 , 015_G15.ab1: 118169-119688 , 015_G19.ab1: 118169-119717 , 015_P08.ab1: 118169-119736 , 016_C08.ab1: 118169-119679 , 016_D24.ab1: 118169-119755 , 018_C19.ab1: 118192-119555 , 018_E22.ab1: 118169-119720 , 018_F01.ab1: 118194-119696 , 018_M16.ab1: 118171-119612 , 019_A20.ab1: 118169-119734 , 019_J19.ab1: 118169-119729 , 020_A08.ab1: 118169-119804 , 020_G23.ab1: 118169-119739 , 021_C07.ab1: 118169-119784 , 021_C17.ab1: 118169-119784 , 021_K16.ab1: 118169-119735 , 022_D10.ab1: 118175-119669 , 023_E17.ab1: 118169-119571 , 023_M08.ab1: 118169-119725 , 023_O11.ab1: 118169-119592 , 023_P12.ab1: 118169-119701 , 024_B17.ab1: 118169-119753 , 024_D10.ab1: 118198-119682 , 024_I07.ab1: 118174-119672 , 024_M09.ab1: 118169-119784 , 025_B03.ab1: 118169-118909 , 025_D08.ab1: 118169-119755 , 025_F14.ab1: 118194-119777 , 025_I02.ab1: 118169-119782 , 026_H17.ab1: 118171-119704 , 026_I09.ab1: 118169-119608 , 026_P05.ab1: 118169-119674 , 027_B01.ab1: 118169-119747 , 027_E22.ab1: 118169-119784 , 027_F24.ab1: 118169-119610 , 027_M05.ab1: 118169-119737 , 028_E06.ab1: 118194-119540 , 028_J08.ab1: 118170-119515 , 028_M03.ab1: 118169-119734 , 029_B15.ab1: 118169-119615 , 029_E05.ab1: 118174-118892 , 029_K15.ab1: 118169-119696 , 029_K20.ab1: 118198-118812 , 030_A13.ab1: 118169-119767 , 030_I09.ab1: 118169-119769 , 030_K17.ab1: 118169-119684 , 030_L07.ab1: 118169-119792 , 030_O17.ab1: 118169-119647 , 031_B10.ab1: 118169-119769 , 031_E22.ab1: 118169-119757 , 031_F24.ab1: 118169-119782 , 031_J08.ab1: 118169-119784 , 032_B12.ab1: 118169-119784 , 032_F17.ab1: 118169-119784 , 032_P18.ab1: 118169-119696 , 033_H08.ab1: 118169-119734 , 034_G10.ab1: 118171-119782 , 034_I09.ab1: 118169-119738 , 034_N19.ab1: 118169-119778 , 035_G04.ab1: 118169-119806 , 035_O07.ab1: 118169-119770 , 036_C06.ab1: 118169-119784 , 036_E18.ab1: 118169-119784 , 036_P21.ab1: 118169-119755 , 037_F06.ab1: 118169-119701 , 037_G09.ab1: 118169-119785 , 038_G21.ab1: 118169-119735 , 038_K13.ab1: 118169-119784 , 039_A10.ab1: 118169-119741 , 039_C10.ab1: 118169-119623 , 039_G11.ab1: 118169-119803 , 039_K13.ab1: 118171-119679 , 039_N19.ab1: 118171-119572 , 040_F22.ab1: 118169-119768 , 040_M10.ab1: 118169-119912 , 041_P07.ab1: 118167-119767 , 042_D23.ab1: 118176-119755 , 042_I01.ab1: 118169-119774 , 042_I04.ab1: 118169-119778 , 042_P02.ab1: 118169-119743 , 043_L02.ab1: 118169-119682 , 044_A10.ab1: 118169-119759 , 044_D24.ab1: 118169-119780 , 044_G17.ab1: 118169-119763 , 044_M21.ab1: 118169-119736 , 044_N19.ab1: 118169-119755 , 044_O19.ab1: 118169-119688 , 045_D08.ab1: 118169-119795 , 045_F04.ab1: 118169-119754 , 045_M09.ab1: 118169-119690 , 046_B16.ab1: 118169-119782 , 046_I15.ab1: 118169-119754 , 047_C05.ab1: 118169-119770 , 047_I06.ab1: 118169-119743 , 047_I15.ab1: 118194-119802 , 047_J20.ab1: 118169-119607 , 047_N23.ab1: 118169-119782 , 048_A24.ab1: 118169-119755 , 048_B20.ab1: 118169-119755 , 048_F08.ab1: 118172-119789 , 048_I13.ab1: 118169-119755 , 048_M05.ab1: 118169-119769 , 048_O09.ab1: 119807-119914 , 049_E17.ab1: 118169-119536 , 049_G24.ab1: 118169-119688 , 049_J04.ab1: 118169-119686 , 049_K21.ab1: 118169-119490 , 051_A01.ab1: 118171-119579 , 051_O11.ab1: 118169-119615 , 052_J04.ab1: 118169-119776 , 052_L09.ab1: 118169-119740 , 053_D09.ab1: 118175-119697 , 053_J22.ab1: 118169-119773 , 053_M07.ab1: 118169-119743

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_090 0.0 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
2 Hb_148121_010 0.1044232932 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001035_040 0.1145807017 - - unnamed protein product [Coffea canephora]
4 Hb_000107_070 0.1187781079 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
5 Hb_002235_230 0.1191780345 - - latex abundant protein 1 [Hevea brasiliensis]
6 Hb_149683_010 0.124203419 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
7 Hb_002000_110 0.1330106091 - - ASR-like protein 2 [Hevea brasiliensis]
8 Hb_000175_610 0.1348752969 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
9 Hb_006816_440 0.1364336477 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_104010_010 0.1381132212 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
11 Hb_000920_150 0.142760029 - - annexin [Manihot esculenta]
12 Hb_003050_070 0.1447287067 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000300_400 0.1490004661 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
14 Hb_000742_270 0.1551173967 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
15 Hb_001507_070 0.1584870986 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000603_210 0.1590118187 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
17 Hb_075449_050 0.1593690801 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
18 Hb_000032_040 0.1603611027 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
19 Hb_011004_010 0.1617812352 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
20 Hb_003540_230 0.1618371488 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001741_090 Hb_001741_090 Hb_148121_010 Hb_148121_010 Hb_001741_090--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_001741_090--Hb_001035_040 Hb_000107_070 Hb_000107_070 Hb_001741_090--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_149683_010 Hb_149683_010 Hb_001741_090--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_001741_090--Hb_002000_110 Hb_000742_270 Hb_000742_270 Hb_148121_010--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_148121_010--Hb_001507_070 Hb_148121_010--Hb_001035_040 Hb_001268_080 Hb_001268_080 Hb_148121_010--Hb_001268_080 Hb_000032_040 Hb_000032_040 Hb_148121_010--Hb_000032_040 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_075449_050 Hb_075449_050 Hb_000107_070--Hb_075449_050 Hb_023214_010 Hb_023214_010 Hb_000107_070--Hb_023214_010 Hb_000107_070--Hb_002000_110 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310 Hb_006816_440 Hb_006816_440 Hb_002235_230--Hb_006816_440 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_002235_230--Hb_149683_010 Hb_002235_230--Hb_002000_110 Hb_001741_080 Hb_001741_080 Hb_002235_230--Hb_001741_080 Hb_149683_010--Hb_006816_440 Hb_000184_180 Hb_000184_180 Hb_149683_010--Hb_000184_180 Hb_000052_010 Hb_000052_010 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400 Hb_002000_110--Hb_075449_050 Hb_004206_030 Hb_004206_030 Hb_002000_110--Hb_004206_030 Hb_012725_110 Hb_012725_110 Hb_002000_110--Hb_012725_110 Hb_000270_410 Hb_000270_410 Hb_002000_110--Hb_000270_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6493.49 271.745 136.088 2004.3 2142.73 4653.58
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30031.7 11965.1 12451.6 878.306 235.53

CAGE analysis