Hb_000920_150

Information

Type -
Description -
Location Contig920: 87068-89096
Sequence    

Annotation

kegg
ID rcu:RCOM_1453020
description annexin, putative
nr
ID AJJ90390.1
description annexin [Manihot esculenta]
swissprot
ID Q9ZVJ6
description Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=1
trembl
ID A0A0C4ZR11
description Ann5 protein OS=Manihot esculenta GN=Ann5 PE=2 SV=1
Gene Ontology
ID GO:0009506
description annexin d4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62396: 87069-89309
cDNA
(Sanger)
(ID:Location)		 025_C12.ab1: 87069-88725 , 027_E19.ab1: 87074-88129 , 028_C17.ab1: 87072-88211 , 036_O18.ab1: 87072-88702 , 039_N08.ab1: 87074-87953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_150 0.0 - - annexin [Manihot esculenta]
2 Hb_001035_040 0.1101688128 - - unnamed protein product [Coffea canephora]
3 Hb_003207_110 0.1150199289 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
4 Hb_148121_010 0.1292202234 - - conserved hypothetical protein [Ricinus communis]
5 Hb_023214_010 0.1357522018 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
6 Hb_002471_070 0.1362342412 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
7 Hb_001741_090 0.142760029 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
8 Hb_000907_090 0.1503301309 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000107_070 0.1518990749 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
10 Hb_004738_010 0.1595671932 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
11 Hb_000175_610 0.1666950961 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
12 Hb_000742_270 0.1691271671 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
13 Hb_000539_030 0.1746132711 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
14 Hb_003020_310 0.1747750272 - - glycosyltransferase, putative [Ricinus communis]
15 Hb_001507_070 0.1778327558 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000035_430 0.1792816809 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
17 Hb_004077_030 0.1798661261 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
18 Hb_112064_020 0.1824860165 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
19 Hb_005396_040 0.1824999052 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_007140_020 0.1826081972 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]

Gene co-expression network

sample Hb_000920_150 Hb_000920_150 Hb_001035_040 Hb_001035_040 Hb_000920_150--Hb_001035_040 Hb_003207_110 Hb_003207_110 Hb_000920_150--Hb_003207_110 Hb_148121_010 Hb_148121_010 Hb_000920_150--Hb_148121_010 Hb_023214_010 Hb_023214_010 Hb_000920_150--Hb_023214_010 Hb_002471_070 Hb_002471_070 Hb_000920_150--Hb_002471_070 Hb_001741_090 Hb_001741_090 Hb_000920_150--Hb_001741_090 Hb_000107_070 Hb_000107_070 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_001035_040--Hb_148121_010 Hb_003207_110--Hb_002471_070 Hb_005396_040 Hb_005396_040 Hb_003207_110--Hb_005396_040 Hb_003207_110--Hb_023214_010 Hb_002876_030 Hb_002876_030 Hb_003207_110--Hb_002876_030 Hb_003207_110--Hb_001035_040 Hb_000742_270 Hb_000742_270 Hb_148121_010--Hb_000742_270 Hb_148121_010--Hb_001741_090 Hb_001507_070 Hb_001507_070 Hb_148121_010--Hb_001507_070 Hb_001268_080 Hb_001268_080 Hb_148121_010--Hb_001268_080 Hb_000032_040 Hb_000032_040 Hb_148121_010--Hb_000032_040 Hb_023214_010--Hb_005396_040 Hb_023214_010--Hb_000107_070 Hb_124315_040 Hb_124315_040 Hb_023214_010--Hb_124315_040 Hb_003020_310 Hb_003020_310 Hb_023214_010--Hb_003020_310 Hb_023214_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_023214_010--Hb_007120_070 Hb_002471_070--Hb_005396_040 Hb_002471_070--Hb_002876_030 Hb_002471_070--Hb_023214_010 Hb_002471_070--Hb_001035_040 Hb_001741_090--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_149683_010 Hb_149683_010 Hb_001741_090--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_001741_090--Hb_002000_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
277.67 8.85082 11.5329 209.936 63.5861 106.239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
840.742 309.941 393.016 38.3638 24.0384

CAGE analysis