Hb_003207_110

Information

Type rubber biosynthesis
Description Gene Name: Hydroxymethylglutaryl coenzyme A synthase
Location Contig3207: 125135-130965
Sequence    

Annotation

kegg
ID rcu:RCOM_1683050
description hydroxymethylglutaryl-CoA synthase, putative (EC:2.3.3.10)
nr
ID AAL18930.1
description hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
swissprot
ID P54873
description Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2
trembl
ID Q944F8
description Hydroxymethylglutaryl coenzyme A synthase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description hydroxymethylglutaryl- synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33903: 125135-130941 , PASA_asmbl_33904: 125136-130915
cDNA
(Sanger)
(ID:Location)		 009_D17.ab1: 128653-130876 , 042_A16.ab1: 125139-125357

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_110 0.0 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
2 Hb_002471_070 0.0982031278 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
3 Hb_000920_150 0.1150199289 - - annexin [Manihot esculenta]
4 Hb_005396_040 0.123735742 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_023214_010 0.1443858333 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
6 Hb_002876_030 0.1511411453 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
7 Hb_001035_040 0.1561616011 - - unnamed protein product [Coffea canephora]
8 Hb_112064_020 0.1680721817 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
9 Hb_000907_090 0.1774681868 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001373_150 0.1789053445 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
11 Hb_004738_010 0.1827120194 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
12 Hb_006570_070 0.1840032715 - - cyclophilin [Hevea brasiliensis]
13 Hb_000107_070 0.1863702546 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
14 Hb_124315_040 0.1885480665 - - hypothetical protein 19 [Hevea brasiliensis]
15 Hb_002235_400 0.1890788328 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
16 Hb_148121_010 0.190385528 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009493_010 0.1910519515 - - Minor allergen Alt a, putative [Ricinus communis]
18 Hb_007140_020 0.19120278 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
19 Hb_075449_050 0.1950435508 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
20 Hb_030565_130 0.1953792071 - - hypothetical protein JCGZ_01083 [Jatropha curcas]

Gene co-expression network

sample Hb_003207_110 Hb_003207_110 Hb_002471_070 Hb_002471_070 Hb_003207_110--Hb_002471_070 Hb_000920_150 Hb_000920_150 Hb_003207_110--Hb_000920_150 Hb_005396_040 Hb_005396_040 Hb_003207_110--Hb_005396_040 Hb_023214_010 Hb_023214_010 Hb_003207_110--Hb_023214_010 Hb_002876_030 Hb_002876_030 Hb_003207_110--Hb_002876_030 Hb_001035_040 Hb_001035_040 Hb_003207_110--Hb_001035_040 Hb_002471_070--Hb_005396_040 Hb_002471_070--Hb_000920_150 Hb_002471_070--Hb_002876_030 Hb_002471_070--Hb_023214_010 Hb_002471_070--Hb_001035_040 Hb_000920_150--Hb_001035_040 Hb_148121_010 Hb_148121_010 Hb_000920_150--Hb_148121_010 Hb_000920_150--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_000920_150--Hb_001741_090 Hb_005396_040--Hb_023214_010 Hb_124315_040 Hb_124315_040 Hb_005396_040--Hb_124315_040 Hb_005396_040--Hb_002876_030 Hb_012347_010 Hb_012347_010 Hb_005396_040--Hb_012347_010 Hb_000107_070 Hb_000107_070 Hb_023214_010--Hb_000107_070 Hb_023214_010--Hb_124315_040 Hb_003020_310 Hb_003020_310 Hb_023214_010--Hb_003020_310 Hb_023214_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_023214_010--Hb_007120_070 Hb_006070_010 Hb_006070_010 Hb_002876_030--Hb_006070_010 Hb_000139_330 Hb_000139_330 Hb_002876_030--Hb_000139_330 Hb_002876_030--Hb_124315_040 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_001035_040--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
438.199 57.313 19.3554 239.616 77.4816 133.976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
885.716 224.676 422.031 47.4461 14.2457

CAGE analysis