Hb_000139_330

Information

Type -
Description -
Location Contig139: 353402-355043
Sequence    

Annotation

kegg
ID rcu:RCOM_0913580
description short chain dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002517190.1
description short chain dehydrogenase, putative [Ricinus communis]
swissprot
ID Q5KTS5
description Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1
trembl
ID B9RTX1
description Short chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_0913580 PE=3 SV=1
Gene Ontology
ID GO:0016491
description short chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10658: 353396-354855 , PASA_asmbl_10659: 354567-354677
cDNA
(Sanger)
(ID:Location)		 037_B14.ab1: 353882-354853

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_330 0.0 - - short chain dehydrogenase, putative [Ricinus communis]
2 Hb_004032_440 0.155201775 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
3 Hb_006501_110 0.1564552047 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
4 Hb_002876_030 0.1636438177 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
5 Hb_000548_030 0.1672986505 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
6 Hb_023988_020 0.1786502368 - - PREDICTED: transmembrane protein 19 [Prunus mume]
7 Hb_002603_130 0.1833569362 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
8 Hb_005271_170 0.1834204389 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
9 Hb_000705_300 0.1885084757 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
10 Hb_000481_020 0.1924404894 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
11 Hb_000920_140 0.194561149 - - annexin [Manihot esculenta]
12 Hb_000390_200 0.1949904802 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
13 Hb_010483_020 0.197254197 - - latex allergen [Hevea brasiliensis]
14 Hb_005892_060 0.1977441814 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
15 Hb_000184_040 0.1989318128 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
16 Hb_001696_030 0.1989693411 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000032_240 0.1994544302 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003654_010 0.1997154959 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
19 Hb_000613_200 0.1998528342 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
20 Hb_004659_120 0.20018027 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_330 Hb_000139_330 Hb_004032_440 Hb_004032_440 Hb_000139_330--Hb_004032_440 Hb_006501_110 Hb_006501_110 Hb_000139_330--Hb_006501_110 Hb_002876_030 Hb_002876_030 Hb_000139_330--Hb_002876_030 Hb_000548_030 Hb_000548_030 Hb_000139_330--Hb_000548_030 Hb_023988_020 Hb_023988_020 Hb_000139_330--Hb_023988_020 Hb_002603_130 Hb_002603_130 Hb_000139_330--Hb_002603_130 Hb_017434_090 Hb_017434_090 Hb_004032_440--Hb_017434_090 Hb_004032_440--Hb_023988_020 Hb_000184_040 Hb_000184_040 Hb_004032_440--Hb_000184_040 Hb_000376_110 Hb_000376_110 Hb_004032_440--Hb_000376_110 Hb_000920_140 Hb_000920_140 Hb_004032_440--Hb_000920_140 Hb_000762_020 Hb_000762_020 Hb_004032_440--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_000982_070 Hb_000982_070 Hb_006501_110--Hb_000982_070 Hb_000390_200 Hb_000390_200 Hb_006501_110--Hb_000390_200 Hb_004659_120 Hb_004659_120 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090 Hb_005396_040 Hb_005396_040 Hb_002876_030--Hb_005396_040 Hb_002471_070 Hb_002471_070 Hb_002876_030--Hb_002471_070 Hb_006070_010 Hb_006070_010 Hb_002876_030--Hb_006070_010 Hb_003207_110 Hb_003207_110 Hb_002876_030--Hb_003207_110 Hb_124315_040 Hb_124315_040 Hb_002876_030--Hb_124315_040 Hb_003304_050 Hb_003304_050 Hb_000548_030--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_000548_030--Hb_000641_030 Hb_100414_010 Hb_100414_010 Hb_000548_030--Hb_100414_010 Hb_000959_360 Hb_000959_360 Hb_000548_030--Hb_000959_360 Hb_003654_010 Hb_003654_010 Hb_000548_030--Hb_003654_010 Hb_023988_020--Hb_000920_140 Hb_001696_030 Hb_001696_030 Hb_023988_020--Hb_001696_030 Hb_023988_020--Hb_000184_040 Hb_023988_020--Hb_000376_110 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_000032_240 Hb_000032_240 Hb_002603_130--Hb_000032_240 Hb_002603_130--Hb_006501_110 Hb_002603_130--Hb_000982_070 Hb_074197_010 Hb_074197_010 Hb_002603_130--Hb_074197_010 Hb_000207_380 Hb_000207_380 Hb_002603_130--Hb_000207_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
554.981 37.1346 61.4962 272.356 305.196 204.951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
738.753 97.6694 178.758 23.0952 47.2334

CAGE analysis