Hb_100414_010

Information

Type rubber biosynthesis
Description Gene Name: Farnesyl diphosphate synthase
Location Contig100414: 9395-16875
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00530g
description POPTRDRAFT_560081; farnesyl-pyrophosphate synthetase fps2 family protein
nr
ID AKM12344.1
description farnesyl pyrophosphate synthase [Hevea brasiliensis]
swissprot
ID P49351
description Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1
trembl
ID Q8L7F4
description Farnesyl diphosphate synthase OS=Hevea brasiliensis GN=FDP PE=2 SV=1
Gene Ontology
ID GO:0005737
description farnesyl diphosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100414_010 0.0 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
2 Hb_006120_200 0.1426915311 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
3 Hb_004286_040 0.1549553209 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
4 Hb_000018_190 0.1634790366 - - tocopherol cyclase [Hevea brasiliensis]
5 Hb_000548_030 0.1667230929 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
6 Hb_027380_040 0.1731732873 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
7 Hb_003018_140 0.1737801893 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
8 Hb_005147_100 0.1784262976 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001315_020 0.1795110273 - - ring finger protein, putative [Ricinus communis]
10 Hb_000481_020 0.185786758 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
11 Hb_002043_180 0.1899446376 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
12 Hb_178968_150 0.190017556 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000120_240 0.1901105754 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
14 Hb_003777_180 0.1906844543 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
15 Hb_057183_040 0.1909621663 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
16 Hb_006070_010 0.1914102178 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
17 Hb_004137_030 0.1916927654 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005298_060 0.193353074 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
19 Hb_004007_160 0.1963328858 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
20 Hb_001960_040 0.1991375806 - - PREDICTED: CTP synthase [Jatropha curcas]

Gene co-expression network

sample Hb_100414_010 Hb_100414_010 Hb_006120_200 Hb_006120_200 Hb_100414_010--Hb_006120_200 Hb_004286_040 Hb_004286_040 Hb_100414_010--Hb_004286_040 Hb_000018_190 Hb_000018_190 Hb_100414_010--Hb_000018_190 Hb_000548_030 Hb_000548_030 Hb_100414_010--Hb_000548_030 Hb_027380_040 Hb_027380_040 Hb_100414_010--Hb_027380_040 Hb_003018_140 Hb_003018_140 Hb_100414_010--Hb_003018_140 Hb_000762_020 Hb_000762_020 Hb_006120_200--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006120_200--Hb_000481_020 Hb_001315_020 Hb_001315_020 Hb_006120_200--Hb_001315_020 Hb_006070_010 Hb_006070_010 Hb_006120_200--Hb_006070_010 Hb_002027_300 Hb_002027_300 Hb_006120_200--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_006120_200--Hb_000957_040 Hb_004286_040--Hb_006120_200 Hb_004286_040--Hb_027380_040 Hb_000120_240 Hb_000120_240 Hb_004286_040--Hb_000120_240 Hb_000956_130 Hb_000956_130 Hb_004286_040--Hb_000956_130 Hb_002043_180 Hb_002043_180 Hb_004286_040--Hb_002043_180 Hb_002027_220 Hb_002027_220 Hb_004286_040--Hb_002027_220 Hb_003777_180 Hb_003777_180 Hb_000018_190--Hb_003777_180 Hb_000018_190--Hb_003018_140 Hb_003747_030 Hb_003747_030 Hb_000018_190--Hb_003747_030 Hb_000412_110 Hb_000412_110 Hb_000018_190--Hb_000412_110 Hb_000329_040 Hb_000329_040 Hb_000018_190--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_000018_190--Hb_000260_080 Hb_003304_050 Hb_003304_050 Hb_000548_030--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_000548_030--Hb_000641_030 Hb_000139_330 Hb_000139_330 Hb_000548_030--Hb_000139_330 Hb_000959_360 Hb_000959_360 Hb_000548_030--Hb_000959_360 Hb_003654_010 Hb_003654_010 Hb_000548_030--Hb_003654_010 Hb_005298_060 Hb_005298_060 Hb_027380_040--Hb_005298_060 Hb_027380_040--Hb_006120_200 Hb_073973_170 Hb_073973_170 Hb_027380_040--Hb_073973_170 Hb_004137_030 Hb_004137_030 Hb_027380_040--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_027380_040--Hb_002619_010 Hb_003018_140--Hb_006120_200 Hb_003018_140--Hb_003777_180 Hb_003018_140--Hb_002043_180 Hb_003018_140--Hb_004286_040 Hb_001357_140 Hb_001357_140 Hb_003018_140--Hb_001357_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.0997 0.732843 5.59463 7.59748 7.25912 10.9173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1951 14.6373 12.922 1.15996 3.46071

CAGE analysis