Hb_000959_360

Information

Type -
Description -
Location Contig959: 335660-338750
Sequence    

Annotation

kegg
ID rcu:RCOM_1732080
description transporter, putative
nr
ID XP_002522205.1
description transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S886
description Transporter, putative OS=Ricinus communis GN=RCOM_1732080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63678: 337680-338039 , PASA_asmbl_63679: 338045-338919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_360 0.0 - - transporter, putative [Ricinus communis]
2 Hb_000548_030 0.1732237942 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
3 Hb_002388_060 0.1812394868 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000641_030 0.183180099 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
5 Hb_002094_020 0.1869261489 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
6 Hb_001980_020 0.1918042492 - - -
7 Hb_000373_290 0.1968556316 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
8 Hb_002477_230 0.1982018692 - - PREDICTED: verprolin [Jatropha curcas]
9 Hb_000523_020 0.1993658617 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
10 Hb_017111_010 0.1998440975 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
11 Hb_007044_210 0.2004689323 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
12 Hb_000416_100 0.2004854431 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
13 Hb_003687_200 0.2030382953 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
14 Hb_002875_090 0.2041507344 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003253_010 0.2050620945 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
16 Hb_001454_390 0.2053431417 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
17 Hb_170116_010 0.205966206 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
18 Hb_000376_110 0.2080480506 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
19 Hb_000352_150 0.2107881268 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
20 Hb_003636_090 0.2126628444 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000959_360 Hb_000959_360 Hb_000548_030 Hb_000548_030 Hb_000959_360--Hb_000548_030 Hb_002388_060 Hb_002388_060 Hb_000959_360--Hb_002388_060 Hb_000641_030 Hb_000641_030 Hb_000959_360--Hb_000641_030 Hb_002094_020 Hb_002094_020 Hb_000959_360--Hb_002094_020 Hb_001980_020 Hb_001980_020 Hb_000959_360--Hb_001980_020 Hb_000373_290 Hb_000373_290 Hb_000959_360--Hb_000373_290 Hb_003304_050 Hb_003304_050 Hb_000548_030--Hb_003304_050 Hb_000548_030--Hb_000641_030 Hb_100414_010 Hb_100414_010 Hb_000548_030--Hb_100414_010 Hb_000139_330 Hb_000139_330 Hb_000548_030--Hb_000139_330 Hb_003654_010 Hb_003654_010 Hb_000548_030--Hb_003654_010 Hb_007545_210 Hb_007545_210 Hb_002388_060--Hb_007545_210 Hb_000523_020 Hb_000523_020 Hb_002388_060--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_002388_060--Hb_000416_100 Hb_000270_400 Hb_000270_400 Hb_002388_060--Hb_000270_400 Hb_032264_130 Hb_032264_130 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_000641_030--Hb_003304_050 Hb_000376_110 Hb_000376_110 Hb_000641_030--Hb_000376_110 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_003687_200 Hb_003687_200 Hb_000641_030--Hb_003687_200 Hb_000920_140 Hb_000920_140 Hb_000641_030--Hb_000920_140 Hb_000641_030--Hb_000416_100 Hb_017111_010 Hb_017111_010 Hb_002094_020--Hb_017111_010 Hb_027751_030 Hb_027751_030 Hb_002094_020--Hb_027751_030 Hb_001230_010 Hb_001230_010 Hb_002094_020--Hb_001230_010 Hb_000928_230 Hb_000928_230 Hb_002094_020--Hb_000928_230 Hb_126669_010 Hb_126669_010 Hb_002094_020--Hb_126669_010 Hb_000352_150 Hb_000352_150 Hb_001980_020--Hb_000352_150 Hb_003777_070 Hb_003777_070 Hb_001980_020--Hb_003777_070 Hb_170116_010 Hb_170116_010 Hb_001980_020--Hb_170116_010 Hb_003253_010 Hb_003253_010 Hb_001980_020--Hb_003253_010 Hb_002875_090 Hb_002875_090 Hb_001980_020--Hb_002875_090 Hb_007810_050 Hb_007810_050 Hb_001980_020--Hb_007810_050 Hb_000373_290--Hb_000920_140 Hb_001195_580 Hb_001195_580 Hb_000373_290--Hb_001195_580 Hb_023988_020 Hb_023988_020 Hb_000373_290--Hb_023988_020 Hb_000373_290--Hb_000641_030 Hb_005271_170 Hb_005271_170 Hb_000373_290--Hb_005271_170 Hb_019516_040 Hb_019516_040 Hb_000373_290--Hb_019516_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2822 0.12526 0.0229025 2.01776 5.69995 4.03548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94557 4.20758 1.88203 0 0.20888

CAGE analysis