Hb_007810_050

Information

Type -
Description -
Location Contig7810: 47949-49184
Sequence    

Annotation

kegg
ID rcu:RCOM_1207100
description protein with unknown function
nr
ID XP_002530856.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q99KN9
description Clathrin interactor 1 OS=Mus musculus GN=Clint1 PE=1 SV=2
trembl
ID B9SXX7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1207100 PE=4 SV=1
Gene Ontology
ID GO:0006811
description clathrin interactor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57961: 40457-47045 , PASA_asmbl_57962: 40486-47045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_050 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_003253_010 0.1011838057 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
3 Hb_002477_230 0.1356610747 - - PREDICTED: verprolin [Jatropha curcas]
4 Hb_003777_070 0.1384702934 - - -
5 Hb_010098_080 0.1431705161 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
6 Hb_001980_020 0.1480559729 - - -
7 Hb_175445_010 0.1597368925 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
8 Hb_000352_150 0.1616596815 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
9 Hb_170116_010 0.1630123282 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
10 Hb_002232_180 0.1763634799 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
11 Hb_002875_090 0.1800344007 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_043637_010 0.1818778591 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
13 Hb_000500_310 0.181918017 - - -
14 Hb_000853_370 0.1835844908 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
15 Hb_000789_190 0.1848188993 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
16 Hb_002989_080 0.1862535209 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
17 Hb_000038_130 0.1865295193 - - -
18 Hb_053262_010 0.1887585364 - - -
19 Hb_001454_390 0.1899466348 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
20 Hb_003636_090 0.1907236815 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_007810_050 Hb_007810_050 Hb_003253_010 Hb_003253_010 Hb_007810_050--Hb_003253_010 Hb_002477_230 Hb_002477_230 Hb_007810_050--Hb_002477_230 Hb_003777_070 Hb_003777_070 Hb_007810_050--Hb_003777_070 Hb_010098_080 Hb_010098_080 Hb_007810_050--Hb_010098_080 Hb_001980_020 Hb_001980_020 Hb_007810_050--Hb_001980_020 Hb_175445_010 Hb_175445_010 Hb_007810_050--Hb_175445_010 Hb_003253_010--Hb_010098_080 Hb_003253_010--Hb_003777_070 Hb_003253_010--Hb_002477_230 Hb_001454_390 Hb_001454_390 Hb_003253_010--Hb_001454_390 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310 Hb_007849_030 Hb_007849_030 Hb_002477_230--Hb_007849_030 Hb_002388_060 Hb_002388_060 Hb_002477_230--Hb_002388_060 Hb_002477_230--Hb_175445_010 Hb_002477_230--Hb_010098_080 Hb_003777_070--Hb_010098_080 Hb_003777_070--Hb_001980_020 Hb_000038_130 Hb_000038_130 Hb_003777_070--Hb_000038_130 Hb_000352_150 Hb_000352_150 Hb_003777_070--Hb_000352_150 Hb_010098_080--Hb_000500_310 Hb_003018_180 Hb_003018_180 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_002609_260 Hb_002609_260 Hb_010098_080--Hb_002609_260 Hb_001980_020--Hb_000352_150 Hb_170116_010 Hb_170116_010 Hb_001980_020--Hb_170116_010 Hb_001980_020--Hb_003253_010 Hb_002875_090 Hb_002875_090 Hb_001980_020--Hb_002875_090 Hb_003756_010 Hb_003756_010 Hb_175445_010--Hb_003756_010 Hb_175445_010--Hb_003253_010 Hb_175445_010--Hb_001980_020 Hb_004060_010 Hb_004060_010 Hb_175445_010--Hb_004060_010 Hb_175445_010--Hb_010098_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5261 0.102538 0.0881392 0.732274 11.8984 9.75817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15827 13.5229 6.70298 1.10472 0

CAGE analysis