Hb_007849_030

Information

Type -
Description -
Location Contig7849: 26929-31611
Sequence    

Annotation

kegg
ID rcu:RCOM_0609060
description l-allo-threonine aldolase, putative (EC:4.1.2.5)
nr
ID XP_002521974.1
description l-allo-threonine aldolase, putative [Ricinus communis]
swissprot
ID Q8RXU4
description Probable low-specificity L-threonine aldolase 1 OS=Arabidopsis thaliana GN=THA1 PE=1 SV=1
trembl
ID B9S7K5
description L-allo-threonine aldolase, putative OS=Ricinus communis GN=RCOM_0609060 PE=4 SV=1
Gene Ontology
ID GO:0004793
description probable low-specificity l-threonine aldolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58065: 19551-26243 , PASA_asmbl_58066: 30834-31615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007849_030 0.0 - - l-allo-threonine aldolase, putative [Ricinus communis]
2 Hb_002477_230 0.15513111 - - PREDICTED: verprolin [Jatropha curcas]
3 Hb_001980_020 0.1830997606 - - -
4 Hb_003253_010 0.1849661895 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
5 Hb_175445_010 0.1856330175 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
6 Hb_007810_050 0.1976631236 - - protein with unknown function [Ricinus communis]
7 Hb_003777_070 0.209947881 - - -
8 Hb_000680_150 0.2110803047 - - PREDICTED: protein STU1-like [Jatropha curcas]
9 Hb_003756_010 0.2124560139 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
10 Hb_010098_080 0.2140343245 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
11 Hb_000352_150 0.2208100095 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
12 Hb_002843_190 0.2236661257 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
13 Hb_004522_040 0.226470705 - - PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
14 Hb_000127_020 0.2267543797 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
15 Hb_004060_010 0.2278122512 - - -
16 Hb_005410_030 0.2288303362 - - glutaredoxin 2 [Hevea brasiliensis]
17 Hb_010098_070 0.2295907755 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001386_130 0.2338848564 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
19 Hb_027751_030 0.2346565866 - - -
20 Hb_000959_360 0.2368690275 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_007849_030 Hb_007849_030 Hb_002477_230 Hb_002477_230 Hb_007849_030--Hb_002477_230 Hb_001980_020 Hb_001980_020 Hb_007849_030--Hb_001980_020 Hb_003253_010 Hb_003253_010 Hb_007849_030--Hb_003253_010 Hb_175445_010 Hb_175445_010 Hb_007849_030--Hb_175445_010 Hb_007810_050 Hb_007810_050 Hb_007849_030--Hb_007810_050 Hb_003777_070 Hb_003777_070 Hb_007849_030--Hb_003777_070 Hb_002477_230--Hb_003253_010 Hb_002477_230--Hb_007810_050 Hb_002388_060 Hb_002388_060 Hb_002477_230--Hb_002388_060 Hb_002477_230--Hb_175445_010 Hb_010098_080 Hb_010098_080 Hb_002477_230--Hb_010098_080 Hb_000352_150 Hb_000352_150 Hb_001980_020--Hb_000352_150 Hb_001980_020--Hb_003777_070 Hb_170116_010 Hb_170116_010 Hb_001980_020--Hb_170116_010 Hb_001980_020--Hb_003253_010 Hb_002875_090 Hb_002875_090 Hb_001980_020--Hb_002875_090 Hb_001980_020--Hb_007810_050 Hb_003253_010--Hb_010098_080 Hb_003253_010--Hb_003777_070 Hb_003253_010--Hb_007810_050 Hb_001454_390 Hb_001454_390 Hb_003253_010--Hb_001454_390 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310 Hb_003756_010 Hb_003756_010 Hb_175445_010--Hb_003756_010 Hb_175445_010--Hb_007810_050 Hb_175445_010--Hb_003253_010 Hb_175445_010--Hb_001980_020 Hb_004060_010 Hb_004060_010 Hb_175445_010--Hb_004060_010 Hb_175445_010--Hb_010098_080 Hb_007810_050--Hb_003777_070 Hb_007810_050--Hb_010098_080 Hb_003777_070--Hb_010098_080 Hb_000038_130 Hb_000038_130 Hb_003777_070--Hb_000038_130 Hb_003777_070--Hb_000352_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1283 0.400286 0.075616 0.254789 3.89641 3.23297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.5666 11.1147 1.87388 1.32959 0.267475

CAGE analysis