Hb_003756_010

Information

Type -
Description -
Location Contig3756: 19750-20442
Sequence    

Annotation

kegg
ID rcu:RCOM_0863250
description hypothetical protein
nr
ID XP_012082189.1
description PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SA78
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0863250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38339: 19331-20672 , PASA_asmbl_38340: 19631-20672
cDNA
(Sanger)
(ID:Location)		 002_G23.ab1: 19779-20550 , 006_A16.ab1: 19832-20510 , 033_G11.ab1: 19331-19975 , 034_E03.ab1: 19631-20523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003756_010 0.0 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
2 Hb_010872_060 0.1404431428 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
3 Hb_175445_010 0.143671334 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
4 Hb_012799_060 0.1518389303 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_001140_160 0.1571310112 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
6 Hb_000078_030 0.1618168212 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000699_020 0.1624911242 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
8 Hb_124315_040 0.1651104983 - - hypothetical protein 19 [Hevea brasiliensis]
9 Hb_005410_030 0.1668808071 - - glutaredoxin 2 [Hevea brasiliensis]
10 Hb_000284_010 0.1672761622 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
11 Hb_002235_220 0.1687124296 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
12 Hb_001109_120 0.1692545809 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
13 Hb_005450_010 0.1705790145 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
14 Hb_000580_170 0.1718004333 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
15 Hb_000130_390 0.1719072813 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
16 Hb_000997_260 0.1740858039 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
17 Hb_009805_010 0.1749988535 - - transcription factor, putative [Ricinus communis]
18 Hb_012347_010 0.1754026539 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
19 Hb_003018_180 0.1798464579 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
20 Hb_000957_040 0.1801000823 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_003756_010 Hb_003756_010 Hb_010872_060 Hb_010872_060 Hb_003756_010--Hb_010872_060 Hb_175445_010 Hb_175445_010 Hb_003756_010--Hb_175445_010 Hb_012799_060 Hb_012799_060 Hb_003756_010--Hb_012799_060 Hb_001140_160 Hb_001140_160 Hb_003756_010--Hb_001140_160 Hb_000078_030 Hb_000078_030 Hb_003756_010--Hb_000078_030 Hb_000699_020 Hb_000699_020 Hb_003756_010--Hb_000699_020 Hb_012347_010 Hb_012347_010 Hb_010872_060--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_010872_060--Hb_000957_040 Hb_010872_060--Hb_001140_160 Hb_001631_070 Hb_001631_070 Hb_010872_060--Hb_001631_070 Hb_124315_040 Hb_124315_040 Hb_010872_060--Hb_124315_040 Hb_010872_060--Hb_012799_060 Hb_007810_050 Hb_007810_050 Hb_175445_010--Hb_007810_050 Hb_003253_010 Hb_003253_010 Hb_175445_010--Hb_003253_010 Hb_001980_020 Hb_001980_020 Hb_175445_010--Hb_001980_020 Hb_004060_010 Hb_004060_010 Hb_175445_010--Hb_004060_010 Hb_010098_080 Hb_010098_080 Hb_175445_010--Hb_010098_080 Hb_000580_170 Hb_000580_170 Hb_012799_060--Hb_000580_170 Hb_012799_060--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_012799_060--Hb_001741_080 Hb_030765_020 Hb_030765_020 Hb_012799_060--Hb_030765_020 Hb_005016_130 Hb_005016_130 Hb_012799_060--Hb_005016_130 Hb_003540_230 Hb_003540_230 Hb_012799_060--Hb_003540_230 Hb_001140_160--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_000193_230 Hb_000193_230 Hb_000078_030--Hb_000193_230 Hb_000284_010 Hb_000284_010 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_002298_040 Hb_002298_040 Hb_000078_030--Hb_002298_040 Hb_003687_140 Hb_003687_140 Hb_000699_020--Hb_003687_140 Hb_000510_100 Hb_000510_100 Hb_000699_020--Hb_000510_100 Hb_002471_170 Hb_002471_170 Hb_000699_020--Hb_002471_170 Hb_000926_290 Hb_000926_290 Hb_000699_020--Hb_000926_290 Hb_000680_150 Hb_000680_150 Hb_000699_020--Hb_000680_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
602.07 9.35148 2.74949 23.1918 97.0022 270.829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
384.718 307.145 146.109 9.87177 0.50962

CAGE analysis