Hb_003687_140

Information

Type -
Description -
Location Contig3687: 102599-103210
Sequence    

Annotation

kegg
ID brp:103828755
description protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4
nr
ID CDY69731.1
description BnaCnng65050D [Brassica napus]
swissprot
ID Q9LMK2
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
trembl
ID A0A078JW20
description BnaCnng65050D protein OS=Brassica napus GN=BnaCnng65050D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37932: 102484-103544 , PASA_asmbl_37933: 102612-103544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_140 0.0 - - BnaCnng65050D [Brassica napus]
2 Hb_000926_290 0.1254836071 - - conserved hypothetical protein [Ricinus communis]
3 Hb_030765_020 0.1380567727 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_004607_150 0.1421492806 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
5 Hb_000699_020 0.1428536245 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
6 Hb_029584_140 0.1478307979 - - senescence-associated family protein [Populus trichocarpa]
7 Hb_005031_070 0.1492311404 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
8 Hb_027472_090 0.1536778283 - - -
9 Hb_180333_010 0.1545185443 - - -
10 Hb_002471_170 0.1566189411 - - -
11 Hb_000680_150 0.1623327336 - - PREDICTED: protein STU1-like [Jatropha curcas]
12 Hb_001999_120 0.1637257461 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
13 Hb_002918_280 0.1667363393 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
14 Hb_001386_130 0.1677039237 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
15 Hb_012799_060 0.1680919404 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
16 Hb_004012_010 0.1682606742 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
17 Hb_000062_580 0.169437659 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000107_650 0.1695955394 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
19 Hb_000339_070 0.169659276 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
20 Hb_005410_030 0.1707478215 - - glutaredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003687_140 Hb_003687_140 Hb_000926_290 Hb_000926_290 Hb_003687_140--Hb_000926_290 Hb_030765_020 Hb_030765_020 Hb_003687_140--Hb_030765_020 Hb_004607_150 Hb_004607_150 Hb_003687_140--Hb_004607_150 Hb_000699_020 Hb_000699_020 Hb_003687_140--Hb_000699_020 Hb_029584_140 Hb_029584_140 Hb_003687_140--Hb_029584_140 Hb_005031_070 Hb_005031_070 Hb_003687_140--Hb_005031_070 Hb_003226_150 Hb_003226_150 Hb_000926_290--Hb_003226_150 Hb_002529_100 Hb_002529_100 Hb_000926_290--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_000926_290--Hb_003581_090 Hb_000008_320 Hb_000008_320 Hb_000926_290--Hb_000008_320 Hb_008695_190 Hb_008695_190 Hb_000926_290--Hb_008695_190 Hb_000521_150 Hb_000521_150 Hb_000926_290--Hb_000521_150 Hb_000143_050 Hb_000143_050 Hb_030765_020--Hb_000143_050 Hb_012799_060 Hb_012799_060 Hb_030765_020--Hb_012799_060 Hb_000078_030 Hb_000078_030 Hb_030765_020--Hb_000078_030 Hb_060668_010 Hb_060668_010 Hb_030765_020--Hb_060668_010 Hb_001741_080 Hb_001741_080 Hb_030765_020--Hb_001741_080 Hb_000580_170 Hb_000580_170 Hb_030765_020--Hb_000580_170 Hb_180333_010 Hb_180333_010 Hb_004607_150--Hb_180333_010 Hb_006189_010 Hb_006189_010 Hb_004607_150--Hb_006189_010 Hb_002798_060 Hb_002798_060 Hb_004607_150--Hb_002798_060 Hb_000116_470 Hb_000116_470 Hb_004607_150--Hb_000116_470 Hb_004012_010 Hb_004012_010 Hb_004607_150--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_004607_150--Hb_004920_040 Hb_003756_010 Hb_003756_010 Hb_000699_020--Hb_003756_010 Hb_000510_100 Hb_000510_100 Hb_000699_020--Hb_000510_100 Hb_002471_170 Hb_002471_170 Hb_000699_020--Hb_002471_170 Hb_000699_020--Hb_000926_290 Hb_000680_150 Hb_000680_150 Hb_000699_020--Hb_000680_150 Hb_003540_230 Hb_003540_230 Hb_029584_140--Hb_003540_230 Hb_003038_180 Hb_003038_180 Hb_029584_140--Hb_003038_180 Hb_029584_140--Hb_012799_060 Hb_029584_140--Hb_000580_170 Hb_007120_070 Hb_007120_070 Hb_029584_140--Hb_007120_070 Hb_029584_140--Hb_030765_020 Hb_004223_230 Hb_004223_230 Hb_005031_070--Hb_004223_230 Hb_005031_070--Hb_004012_010 Hb_002783_230 Hb_002783_230 Hb_005031_070--Hb_002783_230 Hb_000339_070 Hb_000339_070 Hb_005031_070--Hb_000339_070 Hb_002918_280 Hb_002918_280 Hb_005031_070--Hb_002918_280 Hb_169246_010 Hb_169246_010 Hb_005031_070--Hb_169246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.15 39.1147 0.233175 12.1045 54.691 52.4523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.911 111.517 61.7764 13.8586 0

CAGE analysis