Hb_010098_080

Information

Type -
Description -
Location Contig10098: 35086-37568
Sequence    

Annotation

kegg
ID rcu:RCOM_1516850
description Phospholipase C 3 precursor, putative (EC:3.1.4.3)
nr
ID XP_012070293.1
description PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
swissprot
ID Q9SRQ6
description Non-specific phospholipase C3 OS=Arabidopsis thaliana GN=NPC3 PE=2 SV=1
trembl
ID A0A067KX62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02603 PE=4 SV=1
Gene Ontology
ID GO:0034480
description non-specific phospholipase c3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00564: 35186-37491
cDNA
(Sanger)
(ID:Location)		 017_M04.ab1: 37315-37417

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010098_080 0.0 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
2 Hb_003253_010 0.084414108 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
3 Hb_000500_310 0.1075172757 - - -
4 Hb_003777_070 0.1171302022 - - -
5 Hb_003018_180 0.1292248194 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
6 Hb_002298_040 0.1312117801 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
7 Hb_002609_260 0.1356604412 - - CCCH-type zinc finger protein [Hevea brasiliensis]
8 Hb_009662_030 0.1362744958 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
9 Hb_006499_010 0.1372352001 - - -
10 Hb_001780_060 0.137248172 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
11 Hb_004738_090 0.137787322 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000117_040 0.1423474995 - - 30S ribosomal protein S6A [Hevea brasiliensis]
13 Hb_005730_020 0.1429643851 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
14 Hb_000163_290 0.1429788884 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
15 Hb_007810_050 0.1431705161 - - protein with unknown function [Ricinus communis]
16 Hb_002232_180 0.1435376941 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
17 Hb_000264_190 0.1446432464 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
18 Hb_001454_390 0.1447272506 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
19 Hb_011457_100 0.1450760296 - - ATP binding protein, putative [Ricinus communis]
20 Hb_002875_090 0.1457565208 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010098_080 Hb_010098_080 Hb_003253_010 Hb_003253_010 Hb_010098_080--Hb_003253_010 Hb_000500_310 Hb_000500_310 Hb_010098_080--Hb_000500_310 Hb_003777_070 Hb_003777_070 Hb_010098_080--Hb_003777_070 Hb_003018_180 Hb_003018_180 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_002609_260 Hb_002609_260 Hb_010098_080--Hb_002609_260 Hb_003253_010--Hb_003777_070 Hb_007810_050 Hb_007810_050 Hb_003253_010--Hb_007810_050 Hb_002477_230 Hb_002477_230 Hb_003253_010--Hb_002477_230 Hb_001454_390 Hb_001454_390 Hb_003253_010--Hb_001454_390 Hb_003253_010--Hb_000500_310 Hb_004738_090 Hb_004738_090 Hb_000500_310--Hb_004738_090 Hb_001140_160 Hb_001140_160 Hb_000500_310--Hb_001140_160 Hb_001780_060 Hb_001780_060 Hb_000500_310--Hb_001780_060 Hb_004545_150 Hb_004545_150 Hb_000500_310--Hb_004545_150 Hb_000500_310--Hb_002609_260 Hb_001980_020 Hb_001980_020 Hb_003777_070--Hb_001980_020 Hb_000038_130 Hb_000038_130 Hb_003777_070--Hb_000038_130 Hb_000352_150 Hb_000352_150 Hb_003777_070--Hb_000352_150 Hb_003777_070--Hb_007810_050 Hb_000130_390 Hb_000130_390 Hb_003018_180--Hb_000130_390 Hb_003018_180--Hb_001140_160 Hb_000957_040 Hb_000957_040 Hb_003018_180--Hb_000957_040 Hb_003018_180--Hb_002298_040 Hb_003018_180--Hb_004545_150 Hb_003018_180--Hb_001780_060 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_002298_040--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080 Hb_000284_010 Hb_000284_010 Hb_002298_040--Hb_000284_010 Hb_000264_190 Hb_000264_190 Hb_002609_260--Hb_000264_190 Hb_010931_100 Hb_010931_100 Hb_002609_260--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_002609_260--Hb_000563_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
800.568 31.92 2.70644 6.33023 436.584 289.471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
395.459 404.062 310.292 42.9237 1.6172

CAGE analysis