Hb_003777_070

Information

Type -
Description -
Location Contig3777: 71918-78824
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_070 0.0 - - -
2 Hb_003253_010 0.1004155171 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
3 Hb_010098_080 0.1171302022 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
4 Hb_001980_020 0.1328882981 - - -
5 Hb_000038_130 0.1333818714 - - -
6 Hb_000352_150 0.1352344677 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
7 Hb_007810_050 0.1384702934 - - protein with unknown function [Ricinus communis]
8 Hb_001454_390 0.1511656265 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
9 Hb_170116_010 0.1512522489 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
10 Hb_000221_100 0.1532228642 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
11 Hb_000117_040 0.155724983 - - 30S ribosomal protein S6A [Hevea brasiliensis]
12 Hb_002875_090 0.157372664 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000680_150 0.161739236 - - PREDICTED: protein STU1-like [Jatropha curcas]
14 Hb_145761_010 0.1620939786 - - -
15 Hb_075812_010 0.1631781123 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
16 Hb_000590_090 0.1661097433 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_004223_230 0.1665898074 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
18 Hb_007451_030 0.1669616004 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
19 Hb_000816_110 0.1706593107 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_000977_140 0.1718773168 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]

Gene co-expression network

sample Hb_003777_070 Hb_003777_070 Hb_003253_010 Hb_003253_010 Hb_003777_070--Hb_003253_010 Hb_010098_080 Hb_010098_080 Hb_003777_070--Hb_010098_080 Hb_001980_020 Hb_001980_020 Hb_003777_070--Hb_001980_020 Hb_000038_130 Hb_000038_130 Hb_003777_070--Hb_000038_130 Hb_000352_150 Hb_000352_150 Hb_003777_070--Hb_000352_150 Hb_007810_050 Hb_007810_050 Hb_003777_070--Hb_007810_050 Hb_003253_010--Hb_010098_080 Hb_003253_010--Hb_007810_050 Hb_002477_230 Hb_002477_230 Hb_003253_010--Hb_002477_230 Hb_001454_390 Hb_001454_390 Hb_003253_010--Hb_001454_390 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310 Hb_010098_080--Hb_000500_310 Hb_003018_180 Hb_003018_180 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_002609_260 Hb_002609_260 Hb_010098_080--Hb_002609_260 Hb_001980_020--Hb_000352_150 Hb_170116_010 Hb_170116_010 Hb_001980_020--Hb_170116_010 Hb_001980_020--Hb_003253_010 Hb_002875_090 Hb_002875_090 Hb_001980_020--Hb_002875_090 Hb_001980_020--Hb_007810_050 Hb_000714_020 Hb_000714_020 Hb_000038_130--Hb_000714_020 Hb_001635_220 Hb_001635_220 Hb_000038_130--Hb_001635_220 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_002078_430 Hb_002078_430 Hb_000038_130--Hb_002078_430 Hb_000590_090 Hb_000590_090 Hb_000038_130--Hb_000590_090 Hb_004374_010 Hb_004374_010 Hb_000038_130--Hb_004374_010 Hb_000352_150--Hb_002875_090 Hb_000352_150--Hb_170116_010 Hb_003636_090 Hb_003636_090 Hb_000352_150--Hb_003636_090 Hb_000352_150--Hb_001454_390 Hb_000352_150--Hb_003253_010 Hb_007810_050--Hb_002477_230 Hb_007810_050--Hb_010098_080 Hb_175445_010 Hb_175445_010 Hb_007810_050--Hb_175445_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34148 0.218838 0.0575951 0 2.137 1.36823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14263 2.07271 0.734502 0.140939 0

CAGE analysis