Hb_017111_010

Information

Type -
Description -
Location Contig17111: 19446-25234
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01630g
description POPTRDRAFT_831764; sugar transporter family protein
nr
ID XP_012074026.1
description PREDICTED: inositol transporter 4 [Jatropha curcas]
swissprot
ID O23492
description Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1
trembl
ID A0A067KJM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09511 PE=3 SV=1
Gene Ontology
ID GO:0016021
description inositol transporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15998: 19488-22410 , PASA_asmbl_15999: 25047-25261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017111_010 0.0 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
2 Hb_000186_100 0.1239902654 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
3 Hb_000523_020 0.1438315943 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
4 Hb_002388_060 0.1445415657 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003687_200 0.1500700073 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
6 Hb_007545_210 0.1600299973 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
7 Hb_126669_010 0.1622461712 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
8 Hb_011616_030 0.17086264 - - -
9 Hb_002094_020 0.1728706316 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
10 Hb_000270_400 0.1732246034 - - lipase, putative [Ricinus communis]
11 Hb_000376_150 0.1821832887 - - O-acyltransferase WSD1 [Gossypium arboreum]
12 Hb_004254_040 0.1866413323 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
13 Hb_032264_130 0.1872649544 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
14 Hb_170116_010 0.1877353644 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
15 Hb_001178_020 0.1922296702 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
16 Hb_000928_230 0.1967483924 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002627_060 0.197487183 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
18 Hb_000959_360 0.1998440975 - - transporter, putative [Ricinus communis]
19 Hb_000416_100 0.2023062251 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
20 Hb_007382_040 0.2025697968 - - uncharacterized LOC105644857 [Jatropha curcas]

Gene co-expression network

sample Hb_017111_010 Hb_017111_010 Hb_000186_100 Hb_000186_100 Hb_017111_010--Hb_000186_100 Hb_000523_020 Hb_000523_020 Hb_017111_010--Hb_000523_020 Hb_002388_060 Hb_002388_060 Hb_017111_010--Hb_002388_060 Hb_003687_200 Hb_003687_200 Hb_017111_010--Hb_003687_200 Hb_007545_210 Hb_007545_210 Hb_017111_010--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_017111_010--Hb_126669_010 Hb_000186_100--Hb_002388_060 Hb_000186_100--Hb_007545_210 Hb_040506_010 Hb_040506_010 Hb_000186_100--Hb_040506_010 Hb_000186_100--Hb_003687_200 Hb_032264_130 Hb_032264_130 Hb_000186_100--Hb_032264_130 Hb_000270_400 Hb_000270_400 Hb_000523_020--Hb_000270_400 Hb_000523_020--Hb_126669_010 Hb_000523_020--Hb_007545_210 Hb_000523_020--Hb_002388_060 Hb_170116_010 Hb_170116_010 Hb_000523_020--Hb_170116_010 Hb_002627_060 Hb_002627_060 Hb_000523_020--Hb_002627_060 Hb_002388_060--Hb_007545_210 Hb_000416_100 Hb_000416_100 Hb_002388_060--Hb_000416_100 Hb_002388_060--Hb_000270_400 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_003304_050 Hb_003304_050 Hb_003687_200--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_003687_200--Hb_000641_030 Hb_000009_640 Hb_000009_640 Hb_003687_200--Hb_000009_640 Hb_003687_200--Hb_000416_100 Hb_007545_210--Hb_000270_400 Hb_007545_210--Hb_000416_100 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_000928_230 Hb_000928_230 Hb_126669_010--Hb_000928_230 Hb_126669_010--Hb_000270_400 Hb_126669_010--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_126669_010--Hb_000172_610 Hb_126669_010--Hb_000376_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1049.17 16.0832 4.67177 24.6361 294.859 328.142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
207.203 58.0243 54.0527 10.2739 4.65805

CAGE analysis