Hb_000207_380

Information

Type -
Description -
Location Contig207: 494943-498841
Sequence    

Annotation

kegg
ID rcu:RCOM_0686970
description sucrose transport protein, putative
nr
ID CAM34330.1
description sucrose transporter 6 [Hevea brasiliensis]
swissprot
ID Q39231
description Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2
trembl
ID B0R210
description Sucrose transporter 6 OS=Hevea brasiliensis GN=sut6 PE=2 SV=1
Gene Ontology
ID GO:0005887
description sucrose transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21338: 494869-498632
cDNA
(Sanger)
(ID:Location)		 028_B03.ab1: 497944-498632 , 032_E21.ab1: 498060-498238 , 033_I21.ab1: 497886-498632 , 050_I21.ab1: 497894-498632

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_380 0.0 - - sucrose transporter 6 [Hevea brasiliensis]
2 Hb_000982_070 0.1594497343 - - unnamed protein product [Vitis vinifera]
3 Hb_007140_020 0.1727311324 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
4 Hb_002603_130 0.1749721209 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
5 Hb_000922_170 0.1760409415 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
6 Hb_000384_130 0.1796877148 - - uridylate kinase plant, putative [Ricinus communis]
7 Hb_164926_020 0.1809935498 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
8 Hb_054074_010 0.1836535566 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
9 Hb_000559_080 0.186375243 - - PREDICTED: calcineurin B-like protein 4 [Jatropha curcas]
10 Hb_004724_140 0.1894808939 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
11 Hb_002893_120 0.1905793822 - - PREDICTED: uncharacterized protein LOC105637692 [Jatropha curcas]
12 Hb_004116_080 0.1933023526 - - ATATH9, putative [Ricinus communis]
13 Hb_077354_010 0.200774506 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
14 Hb_007809_090 0.2011813705 - - protease inhibitor protein [Hevea brasiliensis]
15 Hb_001882_070 0.2012029435 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
16 Hb_002234_070 0.2017327796 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
17 Hb_000046_260 0.2036408398 - - acyl carrier protein, putative [Ricinus communis]
18 Hb_000035_430 0.2039925399 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
19 Hb_029584_060 0.2043002261 - - Grave disease carrier protein, putative [Ricinus communis]
20 Hb_001135_080 0.2043979358 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000207_380 Hb_000207_380 Hb_000982_070 Hb_000982_070 Hb_000207_380--Hb_000982_070 Hb_007140_020 Hb_007140_020 Hb_000207_380--Hb_007140_020 Hb_002603_130 Hb_002603_130 Hb_000207_380--Hb_002603_130 Hb_000922_170 Hb_000922_170 Hb_000207_380--Hb_000922_170 Hb_000384_130 Hb_000384_130 Hb_000207_380--Hb_000384_130 Hb_164926_020 Hb_164926_020 Hb_000207_380--Hb_164926_020 Hb_001135_080 Hb_001135_080 Hb_000982_070--Hb_001135_080 Hb_006501_110 Hb_006501_110 Hb_000982_070--Hb_006501_110 Hb_001922_190 Hb_001922_190 Hb_000982_070--Hb_001922_190 Hb_000481_020 Hb_000481_020 Hb_000982_070--Hb_000481_020 Hb_000907_090 Hb_000907_090 Hb_000982_070--Hb_000907_090 Hb_003126_090 Hb_003126_090 Hb_000982_070--Hb_003126_090 Hb_000035_430 Hb_000035_430 Hb_007140_020--Hb_000035_430 Hb_000012_130 Hb_000012_130 Hb_007140_020--Hb_000012_130 Hb_004738_010 Hb_004738_010 Hb_007140_020--Hb_004738_010 Hb_000188_130 Hb_000188_130 Hb_007140_020--Hb_000188_130 Hb_001687_040 Hb_001687_040 Hb_007140_020--Hb_001687_040 Hb_007140_020--Hb_001135_080 Hb_000032_240 Hb_000032_240 Hb_002603_130--Hb_000032_240 Hb_002603_130--Hb_006501_110 Hb_002603_130--Hb_000982_070 Hb_074197_010 Hb_074197_010 Hb_002603_130--Hb_074197_010 Hb_000139_330 Hb_000139_330 Hb_002603_130--Hb_000139_330 Hb_000046_260 Hb_000046_260 Hb_000922_170--Hb_000046_260 Hb_000922_170--Hb_000188_130 Hb_001045_080 Hb_001045_080 Hb_000922_170--Hb_001045_080 Hb_004116_080 Hb_004116_080 Hb_000922_170--Hb_004116_080 Hb_000161_050 Hb_000161_050 Hb_000922_170--Hb_000161_050 Hb_000922_170--Hb_007140_020 Hb_000159_070 Hb_000159_070 Hb_000384_130--Hb_000159_070 Hb_000384_130--Hb_000046_260 Hb_000384_130--Hb_000035_430 Hb_000809_060 Hb_000809_060 Hb_000384_130--Hb_000809_060 Hb_076693_040 Hb_076693_040 Hb_000384_130--Hb_076693_040 Hb_000062_390 Hb_000062_390 Hb_000384_130--Hb_000062_390 Hb_164926_020--Hb_004116_080 Hb_164926_020--Hb_000384_130 Hb_009787_040 Hb_009787_040 Hb_164926_020--Hb_009787_040 Hb_000948_210 Hb_000948_210 Hb_164926_020--Hb_000948_210 Hb_164926_020--Hb_000922_170 Hb_000510_110 Hb_000510_110 Hb_164926_020--Hb_000510_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.326 9.46107 11.3219 61.1248 26.8304 17.8572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.381 126.073 32.5915 9.80609 34.5476

CAGE analysis