Hb_000384_130

Information

Type -
Description -
Location Contig384: 186423-188572
Sequence    

Annotation

kegg
ID rcu:RCOM_1329770
description uridylate kinase plant, putative (EC:2.7.4.10)
nr
ID XP_002521756.1
description uridylate kinase plant, putative [Ricinus communis]
swissprot
ID Q7XI40
description Probable UMP/CMP kinase 3 OS=Oryza sativa subsp. japonica GN=URA6 PE=2 SV=1
trembl
ID B9S6Y7
description Uridylate kinase plant, putative OS=Ricinus communis GN=RCOM_1329770 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ump-cmp kinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38700: 186466-188598 , PASA_asmbl_38701: 186565-188598
cDNA
(Sanger)
(ID:Location)		 019_J22.ab1: 186466-186956 , 044_J24.ab1: 186567-187539 , 053_D08.ab1: 186565-188031

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_130 0.0 - - uridylate kinase plant, putative [Ricinus communis]
2 Hb_000159_070 0.1275535867 - - JHL03K20.4 [Jatropha curcas]
3 Hb_000046_260 0.1307474201 - - acyl carrier protein, putative [Ricinus communis]
4 Hb_000035_430 0.1312071054 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
5 Hb_000809_060 0.1313647672 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
6 Hb_076693_040 0.137081007 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
7 Hb_000062_390 0.1372648533 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
8 Hb_001604_030 0.1387602619 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
9 Hb_000317_070 0.1395704736 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
10 Hb_000948_210 0.1409012959 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
11 Hb_000935_030 0.1420853324 - - Squalene monooxygenase, putative [Ricinus communis]
12 Hb_001221_310 0.1427991307 - - sec61 gamma subunit, putative [Ricinus communis]
13 Hb_089100_020 0.142848392 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
14 Hb_000312_090 0.1430534426 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
15 Hb_164926_020 0.1431911098 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
16 Hb_004755_030 0.1436922765 - - EG964 [Manihot glaziovii]
17 Hb_002081_030 0.1461072654 - - unnamed protein product [Coffea canephora]
18 Hb_000270_720 0.1465948247 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_001304_140 0.1470843608 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
20 Hb_000297_230 0.1485983122 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]

Gene co-expression network

sample Hb_000384_130 Hb_000384_130 Hb_000159_070 Hb_000159_070 Hb_000384_130--Hb_000159_070 Hb_000046_260 Hb_000046_260 Hb_000384_130--Hb_000046_260 Hb_000035_430 Hb_000035_430 Hb_000384_130--Hb_000035_430 Hb_000809_060 Hb_000809_060 Hb_000384_130--Hb_000809_060 Hb_076693_040 Hb_076693_040 Hb_000384_130--Hb_076693_040 Hb_000062_390 Hb_000062_390 Hb_000384_130--Hb_000062_390 Hb_009384_020 Hb_009384_020 Hb_000159_070--Hb_009384_020 Hb_000159_070--Hb_076693_040 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000172_420 Hb_000172_420 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080 Hb_001045_080 Hb_001045_080 Hb_000046_260--Hb_001045_080 Hb_004116_080 Hb_004116_080 Hb_000046_260--Hb_004116_080 Hb_000312_090 Hb_000312_090 Hb_000046_260--Hb_000312_090 Hb_000045_190 Hb_000045_190 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050 Hb_000191_020 Hb_000191_020 Hb_000035_430--Hb_000191_020 Hb_007140_020 Hb_007140_020 Hb_000035_430--Hb_007140_020 Hb_000035_430--Hb_001687_040 Hb_001604_030 Hb_001604_030 Hb_000035_430--Hb_001604_030 Hb_000027_150 Hb_000027_150 Hb_000035_430--Hb_000027_150 Hb_000012_130 Hb_000012_130 Hb_000035_430--Hb_000012_130 Hb_002081_030 Hb_002081_030 Hb_000809_060--Hb_002081_030 Hb_009778_040 Hb_009778_040 Hb_000809_060--Hb_009778_040 Hb_007885_010 Hb_007885_010 Hb_000809_060--Hb_007885_010 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_000809_060--Hb_076693_040 Hb_001304_140 Hb_001304_140 Hb_076693_040--Hb_001304_140 Hb_002391_220 Hb_002391_220 Hb_076693_040--Hb_002391_220 Hb_076693_040--Hb_009384_020 Hb_076693_040--Hb_000172_420 Hb_000270_720 Hb_000270_720 Hb_076693_040--Hb_000270_720 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_002588_010 Hb_002588_010 Hb_000062_390--Hb_002588_010 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000093_110 Hb_000093_110 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.8412 9.50914 53.1031 56.531 21.6075 26.6757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
178.813 247.293 78.8556 14.5594 28.679

CAGE analysis