Hb_164926_020

Information

Type -
Description -
Location Contig164926: 11785-12812
Sequence    

Annotation

kegg
ID rcu:RCOM_1314160
description hypothetical protein
nr
ID XP_012086633.1
description PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20379 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15160: 11831-12882 , PASA_asmbl_15161: 12330-12856 , PASA_asmbl_15162: 10887-12760
cDNA
(Sanger)
(ID:Location)		 037_J22.ab1: 11974-12882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164926_020 0.0 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
2 Hb_004116_080 0.143110807 - - ATATH9, putative [Ricinus communis]
3 Hb_000384_130 0.1431911098 - - uridylate kinase plant, putative [Ricinus communis]
4 Hb_009787_040 0.1444961514 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
5 Hb_000948_210 0.1455292941 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
6 Hb_000922_170 0.1536675378 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
7 Hb_000510_110 0.1591978217 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
8 Hb_003018_120 0.1601942801 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
9 Hb_000297_230 0.1608647761 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
10 Hb_009913_030 0.1649621923 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
11 Hb_077354_010 0.1660486224 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
12 Hb_007416_220 0.1667612949 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
13 Hb_001341_130 0.1684469162 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001300_040 0.1708161863 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
15 Hb_004724_140 0.1711282684 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
16 Hb_144598_020 0.1735084002 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
17 Hb_000046_260 0.1760496351 - - acyl carrier protein, putative [Ricinus communis]
18 Hb_002759_230 0.1770015641 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
19 Hb_001045_080 0.1770989508 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
20 Hb_004931_090 0.1787191363 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_164926_020 Hb_164926_020 Hb_004116_080 Hb_004116_080 Hb_164926_020--Hb_004116_080 Hb_000384_130 Hb_000384_130 Hb_164926_020--Hb_000384_130 Hb_009787_040 Hb_009787_040 Hb_164926_020--Hb_009787_040 Hb_000948_210 Hb_000948_210 Hb_164926_020--Hb_000948_210 Hb_000922_170 Hb_000922_170 Hb_164926_020--Hb_000922_170 Hb_000510_110 Hb_000510_110 Hb_164926_020--Hb_000510_110 Hb_000045_190 Hb_000045_190 Hb_004116_080--Hb_000045_190 Hb_000046_260 Hb_000046_260 Hb_004116_080--Hb_000046_260 Hb_003018_120 Hb_003018_120 Hb_004116_080--Hb_003018_120 Hb_000798_030 Hb_000798_030 Hb_004116_080--Hb_000798_030 Hb_000160_130 Hb_000160_130 Hb_004116_080--Hb_000160_130 Hb_000188_130 Hb_000188_130 Hb_004116_080--Hb_000188_130 Hb_000159_070 Hb_000159_070 Hb_000384_130--Hb_000159_070 Hb_000384_130--Hb_000046_260 Hb_000035_430 Hb_000035_430 Hb_000384_130--Hb_000035_430 Hb_000809_060 Hb_000809_060 Hb_000384_130--Hb_000809_060 Hb_076693_040 Hb_076693_040 Hb_000384_130--Hb_076693_040 Hb_000062_390 Hb_000062_390 Hb_000384_130--Hb_000062_390 Hb_000099_060 Hb_000099_060 Hb_009787_040--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_009787_040--Hb_000970_010 Hb_000563_240 Hb_000563_240 Hb_009787_040--Hb_000563_240 Hb_019253_030 Hb_019253_030 Hb_009787_040--Hb_019253_030 Hb_155764_020 Hb_155764_020 Hb_009787_040--Hb_155764_020 Hb_005590_020 Hb_005590_020 Hb_009787_040--Hb_005590_020 Hb_000617_090 Hb_000617_090 Hb_000948_210--Hb_000617_090 Hb_012753_230 Hb_012753_230 Hb_000948_210--Hb_012753_230 Hb_012573_070 Hb_012573_070 Hb_000948_210--Hb_012573_070 Hb_004052_020 Hb_004052_020 Hb_000948_210--Hb_004052_020 Hb_000948_210--Hb_000510_110 Hb_000297_230 Hb_000297_230 Hb_000948_210--Hb_000297_230 Hb_000922_170--Hb_000046_260 Hb_000922_170--Hb_000188_130 Hb_001045_080 Hb_001045_080 Hb_000922_170--Hb_001045_080 Hb_000922_170--Hb_004116_080 Hb_000161_050 Hb_000161_050 Hb_000922_170--Hb_000161_050 Hb_007140_020 Hb_007140_020 Hb_000922_170--Hb_007140_020 Hb_002518_050 Hb_002518_050 Hb_000510_110--Hb_002518_050 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_000510_110--Hb_012573_070 Hb_003683_110 Hb_003683_110 Hb_000510_110--Hb_003683_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.7349 11.6757 22.0979 19.7591 18.8517 19.4854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.2403 140.362 35.5505 7.12632 17.3122

CAGE analysis