Hb_000107_070

Information

Type -
Description -
Location Contig107: 57425-58300
Sequence    

Annotation

kegg
ID tcc:TCM_014522
description hypothetical protein
nr
ID XP_012080839.1
description PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16204 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02130: 57801-58191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_070 0.0 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
2 Hb_075449_050 0.1095590993 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_023214_010 0.11123688 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
4 Hb_001035_040 0.111293727 - - unnamed protein product [Coffea canephora]
5 Hb_002000_110 0.1125626969 - - ASR-like protein 2 [Hevea brasiliensis]
6 Hb_001741_090 0.1187781079 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
7 Hb_003020_310 0.1275767124 - - glycosyltransferase, putative [Ricinus communis]
8 Hb_002235_230 0.1373503534 - - latex abundant protein 1 [Hevea brasiliensis]
9 Hb_001671_060 0.1380103003 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
10 Hb_000175_610 0.144253903 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
11 Hb_148121_010 0.1479890538 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007120_070 0.1490289328 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
13 Hb_003540_230 0.1514446381 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000920_150 0.1518990749 - - annexin [Manihot esculenta]
15 Hb_011004_010 0.1528053321 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
16 Hb_149683_010 0.1528439766 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
17 Hb_054865_130 0.1529709182 - - acyltransferase, putative [Ricinus communis]
18 Hb_003038_180 0.1559375148 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
19 Hb_006018_030 0.1567558062 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
20 Hb_006816_440 0.1569264022 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_070 Hb_000107_070 Hb_075449_050 Hb_075449_050 Hb_000107_070--Hb_075449_050 Hb_023214_010 Hb_023214_010 Hb_000107_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_000107_070--Hb_001035_040 Hb_002000_110 Hb_002000_110 Hb_000107_070--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_000107_070--Hb_001741_090 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310 Hb_075449_050--Hb_002000_110 Hb_006018_030 Hb_006018_030 Hb_075449_050--Hb_006018_030 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_075449_050--Hb_023214_010 Hb_075449_050--Hb_001741_090 Hb_005396_040 Hb_005396_040 Hb_023214_010--Hb_005396_040 Hb_124315_040 Hb_124315_040 Hb_023214_010--Hb_124315_040 Hb_023214_010--Hb_003020_310 Hb_023214_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_023214_010--Hb_007120_070 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_148121_010 Hb_148121_010 Hb_001035_040--Hb_148121_010 Hb_002000_110--Hb_002235_230 Hb_004206_030 Hb_004206_030 Hb_002000_110--Hb_004206_030 Hb_012725_110 Hb_012725_110 Hb_002000_110--Hb_012725_110 Hb_000270_410 Hb_000270_410 Hb_002000_110--Hb_000270_410 Hb_001741_090--Hb_148121_010 Hb_001741_090--Hb_002235_230 Hb_149683_010 Hb_149683_010 Hb_001741_090--Hb_149683_010 Hb_001741_090--Hb_002000_110 Hb_003020_310--Hb_007120_070 Hb_078633_010 Hb_078633_010 Hb_003020_310--Hb_078633_010 Hb_000077_410 Hb_000077_410 Hb_003020_310--Hb_000077_410 Hb_003020_310--Hb_148121_010 Hb_003020_310--Hb_001035_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.3312 0.568774 2.99609 7.13295 8.79731 19.6371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.36 53.115 73.2882 3.99434 3.4348

CAGE analysis