Hb_006018_030

Information

Type -
Description -
Location Contig6018: 80092-81152
Sequence    

Annotation

kegg
ID fve:101294520
description uncharacterized protein LOC101294520
nr
ID XP_011001673.1
description PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID V4UA02
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10029838mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50594: 80067-81150 , PASA_asmbl_50595: 80078-81152 , PASA_asmbl_50596: 80100-81103
cDNA
(Sanger)
(ID:Location)		 010_B05.ab1: 80078-81148 , 011_G19.ab1: 80067-81136 , 013_B16.ab1: 80081-81152 , 035_A07.ab1: 80078-81130 , 047_N21.ab1: 80078-81150 , 048_I04.ab1: 80081-81136

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006018_030 0.0 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
2 Hb_075449_050 0.1110308376 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_048937_030 0.136694683 - - hypothetical protein RCOM_0231790 [Ricinus communis]
4 Hb_000107_070 0.1567558062 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
5 Hb_001391_020 0.1689760691 - - Arylacetamide deacetylase, putative [Ricinus communis]
6 Hb_001638_210 0.1724796259 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001671_060 0.173626106 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
8 Hb_002000_110 0.1754756084 - - ASR-like protein 2 [Hevea brasiliensis]
9 Hb_000175_610 0.184799132 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
10 Hb_001780_070 0.192071129 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
11 Hb_033152_050 0.1958774678 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
12 Hb_023214_010 0.1963473027 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
13 Hb_000249_090 0.1988957019 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
14 Hb_004705_030 0.2011647404 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000699_120 0.202088955 - - DNA-binding family protein [Populus trichocarpa]
16 Hb_154443_010 0.2062923698 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
17 Hb_185830_010 0.2138555438 - - PREDICTED: pathogenesis-related protein PR-1 [Jatropha curcas]
18 Hb_000742_270 0.2203354169 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
19 Hb_001741_090 0.2205370142 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
20 Hb_000250_010 0.2210292591 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_006018_030 Hb_006018_030 Hb_075449_050 Hb_075449_050 Hb_006018_030--Hb_075449_050 Hb_048937_030 Hb_048937_030 Hb_006018_030--Hb_048937_030 Hb_000107_070 Hb_000107_070 Hb_006018_030--Hb_000107_070 Hb_001391_020 Hb_001391_020 Hb_006018_030--Hb_001391_020 Hb_001638_210 Hb_001638_210 Hb_006018_030--Hb_001638_210 Hb_001671_060 Hb_001671_060 Hb_006018_030--Hb_001671_060 Hb_002000_110 Hb_002000_110 Hb_075449_050--Hb_002000_110 Hb_075449_050--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_075449_050--Hb_001741_090 Hb_000742_270 Hb_000742_270 Hb_048937_030--Hb_000742_270 Hb_011671_400 Hb_011671_400 Hb_048937_030--Hb_011671_400 Hb_048937_030--Hb_000107_070 Hb_003020_310 Hb_003020_310 Hb_048937_030--Hb_003020_310 Hb_000175_610 Hb_000175_610 Hb_048937_030--Hb_000175_610 Hb_000107_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_000107_070--Hb_001035_040 Hb_000107_070--Hb_002000_110 Hb_000107_070--Hb_001741_090 Hb_000107_070--Hb_003020_310 Hb_185830_010 Hb_185830_010 Hb_001391_020--Hb_185830_010 Hb_001391_020--Hb_075449_050 Hb_001391_020--Hb_001671_060 Hb_001780_070 Hb_001780_070 Hb_001391_020--Hb_001780_070 Hb_001391_020--Hb_000107_070 Hb_000249_090 Hb_000249_090 Hb_001638_210--Hb_000249_090 Hb_001741_040 Hb_001741_040 Hb_001638_210--Hb_001741_040 Hb_000120_650 Hb_000120_650 Hb_001638_210--Hb_000120_650 Hb_001638_210--Hb_075449_050 Hb_001638_210--Hb_048937_030 Hb_000250_010 Hb_000250_010 Hb_001671_060--Hb_000250_010 Hb_001671_060--Hb_000107_070 Hb_007120_070 Hb_007120_070 Hb_001671_060--Hb_007120_070 Hb_000803_050 Hb_000803_050 Hb_001671_060--Hb_000803_050 Hb_001157_220 Hb_001157_220 Hb_001671_060--Hb_001157_220 Hb_000178_110 Hb_000178_110 Hb_001671_060--Hb_000178_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.13 2.01609 2.00135 14.2458 9.741 9.34873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
311.213 86.8133 238.032 12.534 1.03613

CAGE analysis