Hb_001157_220

Information

Type -
Description -
Location Contig1157: 172312-172509
Sequence    

Annotation

kegg
ID rcu:RCOM_0878030
description hypothetical protein
nr
ID XP_002527060.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SM41
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0878030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001671_060 0.1578895906 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
3 Hb_000803_050 0.1749172907 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
4 Hb_008864_060 0.1913466772 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
5 Hb_000614_100 0.1914176976 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
6 Hb_001780_070 0.1969418929 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
7 Hb_002099_050 0.2016246651 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000250_010 0.2019705263 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_185830_010 0.208546466 - - PREDICTED: pathogenesis-related protein PR-1 [Jatropha curcas]
10 Hb_098315_030 0.2127004845 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
11 Hb_026428_010 0.2157664493 - - copper transport protein ATOX1 [Hevea brasiliensis]
12 Hb_001959_260 0.2162678142 - - -
13 Hb_000235_010 0.2193939371 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
14 Hb_006018_030 0.2263115455 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
15 Hb_007120_070 0.226723388 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
16 Hb_002000_110 0.2282497499 - - ASR-like protein 2 [Hevea brasiliensis]
17 Hb_000175_610 0.2307429621 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
18 Hb_000836_500 0.2310966634 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
19 Hb_011671_400 0.231935288 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_000107_070 0.2319401793 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_220 Hb_001157_220 Hb_001671_060 Hb_001671_060 Hb_001157_220--Hb_001671_060 Hb_000803_050 Hb_000803_050 Hb_001157_220--Hb_000803_050 Hb_008864_060 Hb_008864_060 Hb_001157_220--Hb_008864_060 Hb_000614_100 Hb_000614_100 Hb_001157_220--Hb_000614_100 Hb_001780_070 Hb_001780_070 Hb_001157_220--Hb_001780_070 Hb_002099_050 Hb_002099_050 Hb_001157_220--Hb_002099_050 Hb_000250_010 Hb_000250_010 Hb_001671_060--Hb_000250_010 Hb_000107_070 Hb_000107_070 Hb_001671_060--Hb_000107_070 Hb_007120_070 Hb_007120_070 Hb_001671_060--Hb_007120_070 Hb_001671_060--Hb_000803_050 Hb_000178_110 Hb_000178_110 Hb_001671_060--Hb_000178_110 Hb_026428_010 Hb_026428_010 Hb_000803_050--Hb_026428_010 Hb_000235_010 Hb_000235_010 Hb_000803_050--Hb_000235_010 Hb_003050_070 Hb_003050_070 Hb_000803_050--Hb_003050_070 Hb_011004_010 Hb_011004_010 Hb_000803_050--Hb_011004_010 Hb_000575_020 Hb_000575_020 Hb_000803_050--Hb_000575_020 Hb_008864_060--Hb_000250_010 Hb_001959_260 Hb_001959_260 Hb_008864_060--Hb_001959_260 Hb_011671_400 Hb_011671_400 Hb_008864_060--Hb_011671_400 Hb_001276_060 Hb_001276_060 Hb_008864_060--Hb_001276_060 Hb_008864_060--Hb_002099_050 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050 Hb_000617_290 Hb_000617_290 Hb_000614_100--Hb_000617_290 Hb_000614_100--Hb_001780_070 Hb_003286_020 Hb_003286_020 Hb_000614_100--Hb_003286_020 Hb_098315_030 Hb_098315_030 Hb_000614_100--Hb_098315_030 Hb_000614_100--Hb_002099_050 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_001780_070--Hb_003286_020 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_001780_070--Hb_000107_070 Hb_002099_050--Hb_011671_400 Hb_002099_050--Hb_000250_010 Hb_001892_120 Hb_001892_120 Hb_002099_050--Hb_001892_120 Hb_002260_090 Hb_002260_090 Hb_002099_050--Hb_002260_090 Hb_003052_040 Hb_003052_040 Hb_002099_050--Hb_003052_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.80726 0 1.56701 0 3.63946 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6072 12.44 13.3864 2.293 0

CAGE analysis