Hb_000614_100

Information

Type -
Description -
Location Contig614: 72166-75183
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06620g
description POPTRDRAFT_726104; 3-oxoacyl-[acyl-carrier-protein] reductase
nr
ID XP_002314551.1
description 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
swissprot
ID Q949M3
description 3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1
trembl
ID B9HTB3
description 3-oxoacyl-[acyl-carrier-protein] reductase OS=Populus trichocarpa GN=POPTR_0010s06620g PE=3 SV=1
Gene Ontology
ID GO:0009570
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_100 0.0 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
2 Hb_001157_220 0.1914176976 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000617_290 0.1994139726 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001780_070 0.2072085512 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
5 Hb_003286_020 0.21006068 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
6 Hb_098315_030 0.2134326124 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
7 Hb_002099_050 0.2136101603 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001671_060 0.2192547928 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
9 Hb_003913_140 0.2219280686 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
10 Hb_000250_010 0.2222533473 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_008864_060 0.2244037633 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
12 Hb_000545_170 0.2258513007 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
13 Hb_005616_030 0.2330794147 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
14 Hb_185830_010 0.235600618 - - PREDICTED: pathogenesis-related protein PR-1 [Jatropha curcas]
15 Hb_000322_190 0.2388798965 - - -
16 Hb_000157_040 0.2398124036 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
17 Hb_028285_030 0.2443873002 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
18 Hb_001959_260 0.2444299738 - - -
19 Hb_048937_030 0.2450759773 - - hypothetical protein RCOM_0231790 [Ricinus communis]
20 Hb_002326_170 0.2452230426 - - Protein Z, putative [Ricinus communis]

Gene co-expression network

sample Hb_000614_100 Hb_000614_100 Hb_001157_220 Hb_001157_220 Hb_000614_100--Hb_001157_220 Hb_000617_290 Hb_000617_290 Hb_000614_100--Hb_000617_290 Hb_001780_070 Hb_001780_070 Hb_000614_100--Hb_001780_070 Hb_003286_020 Hb_003286_020 Hb_000614_100--Hb_003286_020 Hb_098315_030 Hb_098315_030 Hb_000614_100--Hb_098315_030 Hb_002099_050 Hb_002099_050 Hb_000614_100--Hb_002099_050 Hb_001671_060 Hb_001671_060 Hb_001157_220--Hb_001671_060 Hb_000803_050 Hb_000803_050 Hb_001157_220--Hb_000803_050 Hb_008864_060 Hb_008864_060 Hb_001157_220--Hb_008864_060 Hb_001157_220--Hb_001780_070 Hb_001157_220--Hb_002099_050 Hb_154443_010 Hb_154443_010 Hb_000617_290--Hb_154443_010 Hb_000617_290--Hb_008864_060 Hb_005616_030 Hb_005616_030 Hb_000617_290--Hb_005616_030 Hb_000617_290--Hb_002099_050 Hb_048937_030 Hb_048937_030 Hb_000617_290--Hb_048937_030 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_001780_070--Hb_003286_020 Hb_001780_070--Hb_005616_030 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070 Hb_173281_010 Hb_173281_010 Hb_003286_020--Hb_173281_010 Hb_004800_020 Hb_004800_020 Hb_003286_020--Hb_004800_020 Hb_003286_020--Hb_000175_610 Hb_000235_010 Hb_000235_010 Hb_003286_020--Hb_000235_010 Hb_000545_170 Hb_000545_170 Hb_003286_020--Hb_000545_170 Hb_000563_560 Hb_000563_560 Hb_098315_030--Hb_000563_560 Hb_081245_010 Hb_081245_010 Hb_098315_030--Hb_081245_010 Hb_098315_030--Hb_001780_070 Hb_001349_010 Hb_001349_010 Hb_098315_030--Hb_001349_010 Hb_098315_030--Hb_001157_220 Hb_011671_400 Hb_011671_400 Hb_002099_050--Hb_011671_400 Hb_002099_050--Hb_008864_060 Hb_000250_010 Hb_000250_010 Hb_002099_050--Hb_000250_010 Hb_001892_120 Hb_001892_120 Hb_002099_050--Hb_001892_120 Hb_002260_090 Hb_002260_090 Hb_002099_050--Hb_002260_090 Hb_003052_040 Hb_003052_040 Hb_002099_050--Hb_003052_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0750368 0 0.0169682 0 0.0616998 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.490866 0.193037 0.355902 0 0

CAGE analysis