Hb_004800_020

Information

Type -
Description -
Location Contig4800: 32389-36254
Sequence    

Annotation

kegg
ID cic:CICLE_v10014480mg
description hypothetical protein
nr
ID XP_012069949.1
description PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
swissprot
ID Q9SIN1
description Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2
trembl
ID A0A067L7A8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04221 PE=4 SV=1
Gene Ontology
ID GO:0005623
description inactive tpr repeat-containing thioredoxin ttl3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44681: 33084-35550 , PASA_asmbl_44682: 33355-36139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_020 0.0 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
2 Hb_003286_020 0.1770697079 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
3 Hb_000235_010 0.2131932789 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
4 Hb_000175_610 0.2455745223 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
5 Hb_173281_010 0.2522375139 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
6 Hb_001780_070 0.2536203612 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
7 Hb_011909_110 0.2537084306 - - PREDICTED: uncharacterized protein LOC105633210 [Jatropha curcas]
8 Hb_000803_050 0.2600296245 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
9 Hb_010174_010 0.2611901667 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
10 Hb_000676_340 0.2648869934 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000742_270 0.2654514441 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
12 Hb_001059_170 0.2671503249 - - hexose transporter 1 [Hevea brasiliensis]
13 Hb_004162_260 0.2677477934 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
14 Hb_014834_010 0.2680230251 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
15 Hb_001357_120 0.2714469656 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
16 Hb_003581_300 0.2716444982 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
17 Hb_011004_010 0.2722362189 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
18 Hb_000749_240 0.2729742496 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000575_020 0.274208375 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
20 Hb_001507_070 0.2748170803 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004800_020 Hb_004800_020 Hb_003286_020 Hb_003286_020 Hb_004800_020--Hb_003286_020 Hb_000235_010 Hb_000235_010 Hb_004800_020--Hb_000235_010 Hb_000175_610 Hb_000175_610 Hb_004800_020--Hb_000175_610 Hb_173281_010 Hb_173281_010 Hb_004800_020--Hb_173281_010 Hb_001780_070 Hb_001780_070 Hb_004800_020--Hb_001780_070 Hb_011909_110 Hb_011909_110 Hb_004800_020--Hb_011909_110 Hb_003286_020--Hb_173281_010 Hb_003286_020--Hb_001780_070 Hb_003286_020--Hb_000175_610 Hb_003286_020--Hb_000235_010 Hb_000545_170 Hb_000545_170 Hb_003286_020--Hb_000545_170 Hb_003050_070 Hb_003050_070 Hb_000235_010--Hb_003050_070 Hb_000803_050 Hb_000803_050 Hb_000235_010--Hb_000803_050 Hb_001507_070 Hb_001507_070 Hb_000235_010--Hb_001507_070 Hb_000453_300 Hb_000453_300 Hb_000235_010--Hb_000453_300 Hb_003211_050 Hb_003211_050 Hb_000235_010--Hb_003211_050 Hb_000235_010--Hb_000175_610 Hb_011004_010 Hb_011004_010 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_003371_100 Hb_003371_100 Hb_000175_610--Hb_003371_100 Hb_000742_270 Hb_000742_270 Hb_000175_610--Hb_000742_270 Hb_000175_610--Hb_001507_070 Hb_148121_010 Hb_148121_010 Hb_000175_610--Hb_148121_010 Hb_003913_140 Hb_003913_140 Hb_173281_010--Hb_003913_140 Hb_000749_240 Hb_000749_240 Hb_173281_010--Hb_000749_240 Hb_001741_040 Hb_001741_040 Hb_173281_010--Hb_001741_040 Hb_003144_050 Hb_003144_050 Hb_173281_010--Hb_003144_050 Hb_001902_120 Hb_001902_120 Hb_173281_010--Hb_001902_120 Hb_001780_070--Hb_000175_610 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070 Hb_001959_130 Hb_001959_130 Hb_011909_110--Hb_001959_130 Hb_015430_010 Hb_015430_010 Hb_011909_110--Hb_015430_010 Hb_002043_120 Hb_002043_120 Hb_011909_110--Hb_002043_120 Hb_000167_030 Hb_000167_030 Hb_011909_110--Hb_000167_030 Hb_000613_160 Hb_000613_160 Hb_011909_110--Hb_000613_160 Hb_008215_030 Hb_008215_030 Hb_011909_110--Hb_008215_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49755 0.320398 10.4849 2.89142 0.233291 0.108118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.4664 12.5256 23.2435 4.87624 1.18201

CAGE analysis