Hb_005616_030

Information

Type -
Description -
Location Contig5616: 78333-83173
Sequence    

Annotation

kegg
ID egr:104451718
description wall-associated receptor kinase-like 1
nr
ID XP_010064618.1
description PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
swissprot
ID Q04770
description Cell division protein kinase 2 homolog OS=Entamoeba histolytica GN=CDC2 PE=3 SV=1
trembl
ID A5B519
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023561 PE=4 SV=1
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005616_030 0.0 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
2 Hb_002780_050 0.1609888114 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
3 Hb_008864_060 0.172994905 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
4 Hb_001780_070 0.1806469239 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
5 Hb_000617_290 0.1905649961 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001959_260 0.1958178191 - - -
7 Hb_000720_190 0.2065544228 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_000001_120 0.2119033967 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
9 Hb_028285_030 0.2179810703 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
10 Hb_003286_020 0.2195479158 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
11 Hb_000130_030 0.220650545 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
12 Hb_003913_140 0.2211120001 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
13 Hb_000250_010 0.222037554 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_000545_170 0.2222058572 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
15 Hb_053373_010 0.2279762069 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
16 Hb_000614_100 0.2330794147 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
17 Hb_009038_010 0.2339483166 - - latex cystatin [Hevea brasiliensis]
18 Hb_002326_170 0.2345767346 - - Protein Z, putative [Ricinus communis]
19 Hb_001157_220 0.2356276364 - - conserved hypothetical protein [Ricinus communis]
20 Hb_088538_010 0.2366132463 - - hypothetical protein JCGZ_12177 [Jatropha curcas]

Gene co-expression network

sample Hb_005616_030 Hb_005616_030 Hb_002780_050 Hb_002780_050 Hb_005616_030--Hb_002780_050 Hb_008864_060 Hb_008864_060 Hb_005616_030--Hb_008864_060 Hb_001780_070 Hb_001780_070 Hb_005616_030--Hb_001780_070 Hb_000617_290 Hb_000617_290 Hb_005616_030--Hb_000617_290 Hb_001959_260 Hb_001959_260 Hb_005616_030--Hb_001959_260 Hb_000720_190 Hb_000720_190 Hb_005616_030--Hb_000720_190 Hb_000001_120 Hb_000001_120 Hb_002780_050--Hb_000001_120 Hb_053373_010 Hb_053373_010 Hb_002780_050--Hb_053373_010 Hb_028285_030 Hb_028285_030 Hb_002780_050--Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_002780_050--Hb_128524_010 Hb_002780_050--Hb_008864_060 Hb_000250_010 Hb_000250_010 Hb_008864_060--Hb_000250_010 Hb_008864_060--Hb_001959_260 Hb_011671_400 Hb_011671_400 Hb_008864_060--Hb_011671_400 Hb_001276_060 Hb_001276_060 Hb_008864_060--Hb_001276_060 Hb_002099_050 Hb_002099_050 Hb_008864_060--Hb_002099_050 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_003286_020 Hb_003286_020 Hb_001780_070--Hb_003286_020 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070 Hb_154443_010 Hb_154443_010 Hb_000617_290--Hb_154443_010 Hb_000617_290--Hb_008864_060 Hb_000617_290--Hb_002099_050 Hb_000614_100 Hb_000614_100 Hb_000617_290--Hb_000614_100 Hb_048937_030 Hb_048937_030 Hb_000617_290--Hb_048937_030 Hb_001959_260--Hb_003211_050 Hb_001959_260--Hb_000250_010 Hb_005539_210 Hb_005539_210 Hb_001959_260--Hb_005539_210 Hb_001959_260--Hb_001276_060 Hb_000545_170 Hb_000545_170 Hb_001959_260--Hb_000545_170 Hb_108528_010 Hb_108528_010 Hb_000720_190--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_000720_190--Hb_179520_010 Hb_027346_020 Hb_027346_020 Hb_000720_190--Hb_027346_020 Hb_003052_210 Hb_003052_210 Hb_000720_190--Hb_003052_210 Hb_159352_010 Hb_159352_010 Hb_000720_190--Hb_159352_010 Hb_000720_190--Hb_001959_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142492 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09063 0.306464 0.463226 0.0488331 0

CAGE analysis