Hb_000001_120

Information

Type -
Description -
Location Contig1: 192412-193417
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06400g
description POPTRDRAFT_904161; hypothetical protein
nr
ID KDP21925.1
description hypothetical protein JCGZ_03063 [Jatropha curcas]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID A0A067JPI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03063 PE=4 SV=1
Gene Ontology
ID GO:0005737
description universal stress protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00118: 192269-193393
cDNA
(Sanger)
(ID:Location)		 006_C01.ab1: 192288-193393 , 017_F14.ab1: 192319-193393

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_120 0.0 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
2 Hb_009038_010 0.1813140745 - - latex cystatin [Hevea brasiliensis]
3 Hb_002780_050 0.1979520054 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
4 Hb_053373_010 0.1990365623 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_028285_030 0.2073551675 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
6 Hb_005616_030 0.2119033967 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
7 Hb_000120_360 0.2157917096 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001780_070 0.2287570889 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
9 Hb_128524_010 0.2289505022 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
10 Hb_000130_030 0.2325498707 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
11 Hb_002245_040 0.252414026 - - thioredoxin h [Hevea brasiliensis]
12 Hb_000567_280 0.2643441815 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
13 Hb_010174_010 0.2646994416 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
14 Hb_135585_010 0.2701455462 - - -
15 Hb_003286_020 0.2833875254 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
16 Hb_173281_010 0.2838673912 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
17 Hb_159191_010 0.2850264826 - - protease inhibitor protein [Hevea brasiliensis]
18 Hb_003144_050 0.2862128676 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
19 Hb_000235_010 0.2862772498 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
20 Hb_001047_130 0.290135197 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000001_120 Hb_000001_120 Hb_009038_010 Hb_009038_010 Hb_000001_120--Hb_009038_010 Hb_002780_050 Hb_002780_050 Hb_000001_120--Hb_002780_050 Hb_053373_010 Hb_053373_010 Hb_000001_120--Hb_053373_010 Hb_028285_030 Hb_028285_030 Hb_000001_120--Hb_028285_030 Hb_005616_030 Hb_005616_030 Hb_000001_120--Hb_005616_030 Hb_000120_360 Hb_000120_360 Hb_000001_120--Hb_000120_360 Hb_009038_010--Hb_002780_050 Hb_009038_010--Hb_053373_010 Hb_000130_030 Hb_000130_030 Hb_009038_010--Hb_000130_030 Hb_009038_010--Hb_005616_030 Hb_001780_070 Hb_001780_070 Hb_009038_010--Hb_001780_070 Hb_002780_050--Hb_005616_030 Hb_002780_050--Hb_053373_010 Hb_002780_050--Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_002780_050--Hb_128524_010 Hb_008864_060 Hb_008864_060 Hb_002780_050--Hb_008864_060 Hb_053373_010--Hb_000130_030 Hb_135585_010 Hb_135585_010 Hb_053373_010--Hb_135585_010 Hb_053373_010--Hb_128524_010 Hb_053373_010--Hb_028285_030 Hb_028285_030--Hb_128524_010 Hb_002245_040 Hb_002245_040 Hb_028285_030--Hb_002245_040 Hb_028285_030--Hb_000120_360 Hb_000453_300 Hb_000453_300 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_005616_030--Hb_008864_060 Hb_005616_030--Hb_001780_070 Hb_000617_290 Hb_000617_290 Hb_005616_030--Hb_000617_290 Hb_001959_260 Hb_001959_260 Hb_005616_030--Hb_001959_260 Hb_000720_190 Hb_000720_190 Hb_005616_030--Hb_000720_190 Hb_001047_130 Hb_001047_130 Hb_000120_360--Hb_001047_130 Hb_010174_010 Hb_010174_010 Hb_000120_360--Hb_010174_010 Hb_000175_610 Hb_000175_610 Hb_000120_360--Hb_000175_610 Hb_000120_360--Hb_002245_040 Hb_000120_360--Hb_001780_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.758554 0 0.071002 0.89338 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5704 3.21434 3.01556 0.236966 0

CAGE analysis