Hb_009038_010

Information

Type -
Description -
Location Contig9038: 25159-25753
Sequence    

Annotation

kegg
ID rcu:RCOM_0785060
description Cysteine proteinase inhibitor, putative
nr
ID ACZ02398.1
description latex cystatin [Hevea brasiliensis]
swissprot
ID Q06445
description Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1
trembl
ID E8Z9H3
description Latex cystatin OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0004869
description cysteine proteinase inhibitor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009038_010 0.0 - - latex cystatin [Hevea brasiliensis]
2 Hb_000001_120 0.1813140745 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
3 Hb_002780_050 0.2219568273 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
4 Hb_053373_010 0.2242308163 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_000130_030 0.2334722938 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
6 Hb_005616_030 0.2339483166 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
7 Hb_001780_070 0.2697867827 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
8 Hb_028285_030 0.2741441748 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
9 Hb_000120_360 0.2814009245 - - conserved hypothetical protein [Ricinus communis]
10 Hb_135585_010 0.2877716241 - - -
11 Hb_000083_190 0.2910772423 - - low affinity nitrate transporter, partial [Triticum aestivum]
12 Hb_137268_010 0.3002928742 - - -
13 Hb_015807_110 0.3008852148 - - thioredoxin h [Hevea brasiliensis]
14 Hb_128524_010 0.3017462918 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
15 Hb_000956_140 0.3125701875 - - -
16 Hb_002245_040 0.3139706134 - - thioredoxin h [Hevea brasiliensis]
17 Hb_001391_020 0.3226549975 - - Arylacetamide deacetylase, putative [Ricinus communis]
18 Hb_000567_280 0.3301214445 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
19 Hb_001047_130 0.3420167684 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
20 Hb_141408_010 0.3429842536 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]

Gene co-expression network

sample Hb_009038_010 Hb_009038_010 Hb_000001_120 Hb_000001_120 Hb_009038_010--Hb_000001_120 Hb_002780_050 Hb_002780_050 Hb_009038_010--Hb_002780_050 Hb_053373_010 Hb_053373_010 Hb_009038_010--Hb_053373_010 Hb_000130_030 Hb_000130_030 Hb_009038_010--Hb_000130_030 Hb_005616_030 Hb_005616_030 Hb_009038_010--Hb_005616_030 Hb_001780_070 Hb_001780_070 Hb_009038_010--Hb_001780_070 Hb_000001_120--Hb_002780_050 Hb_000001_120--Hb_053373_010 Hb_028285_030 Hb_028285_030 Hb_000001_120--Hb_028285_030 Hb_000001_120--Hb_005616_030 Hb_000120_360 Hb_000120_360 Hb_000001_120--Hb_000120_360 Hb_002780_050--Hb_005616_030 Hb_002780_050--Hb_053373_010 Hb_002780_050--Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_002780_050--Hb_128524_010 Hb_008864_060 Hb_008864_060 Hb_002780_050--Hb_008864_060 Hb_053373_010--Hb_000130_030 Hb_135585_010 Hb_135585_010 Hb_053373_010--Hb_135585_010 Hb_053373_010--Hb_128524_010 Hb_053373_010--Hb_028285_030 Hb_002045_200 Hb_002045_200 Hb_000130_030--Hb_002045_200 Hb_000130_030--Hb_005616_030 Hb_003144_050 Hb_003144_050 Hb_000130_030--Hb_003144_050 Hb_000130_030--Hb_028285_030 Hb_000130_030--Hb_135585_010 Hb_005616_030--Hb_008864_060 Hb_005616_030--Hb_001780_070 Hb_000617_290 Hb_000617_290 Hb_005616_030--Hb_000617_290 Hb_001959_260 Hb_001959_260 Hb_005616_030--Hb_001959_260 Hb_000720_190 Hb_000720_190 Hb_005616_030--Hb_000720_190 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_003286_020 Hb_003286_020 Hb_001780_070--Hb_003286_020 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15352 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92053 0.287496 0.410953 0 0

CAGE analysis