Hb_002045_200

Information

Type -
Description -
Location Contig2045: 172727-176018
Sequence    

Annotation

kegg
ID tcc:TCM_004236
description DWARF27, putative isoform 1
nr
ID XP_012092479.1
description PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
swissprot
ID C7AU21
description Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D27 PE=1 SV=1
trembl
ID A0A067JMY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21856 PE=4 SV=1
Gene Ontology
ID GO:0008152
description beta-carotene isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21048: 174702-175002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_200 0.0 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
2 Hb_001902_120 0.0978655832 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
3 Hb_002326_170 0.105590875 - - Protein Z, putative [Ricinus communis]
4 Hb_052941_010 0.1125742922 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
5 Hb_001425_050 0.1162154199 - - -
6 Hb_005568_010 0.1178834496 - - -
7 Hb_003913_140 0.1834629429 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
8 Hb_088538_010 0.1946130442 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
9 Hb_000720_190 0.1952107985 - - unknown [Populus trichocarpa x Populus deltoides]
10 Hb_002450_070 0.1984097064 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
11 Hb_001741_040 0.1991300797 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
12 Hb_179520_010 0.2058850398 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
13 Hb_001425_070 0.2092205168 - - -
14 Hb_108528_010 0.2116432869 - - unnamed protein product [Coffea canephora]
15 Hb_001425_060 0.2117999133 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004461_020 0.216053575 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_000130_030 0.2161776261 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
18 Hb_001276_060 0.2209383934 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_010174_070 0.221503183 - - -
20 Hb_173281_010 0.2245926143 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002045_200 Hb_002045_200 Hb_001902_120 Hb_001902_120 Hb_002045_200--Hb_001902_120 Hb_002326_170 Hb_002326_170 Hb_002045_200--Hb_002326_170 Hb_052941_010 Hb_052941_010 Hb_002045_200--Hb_052941_010 Hb_001425_050 Hb_001425_050 Hb_002045_200--Hb_001425_050 Hb_005568_010 Hb_005568_010 Hb_002045_200--Hb_005568_010 Hb_003913_140 Hb_003913_140 Hb_002045_200--Hb_003913_140 Hb_001902_120--Hb_052941_010 Hb_001902_120--Hb_005568_010 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_002326_170--Hb_001425_050 Hb_001276_060 Hb_001276_060 Hb_002326_170--Hb_001276_060 Hb_008864_060 Hb_008864_060 Hb_002326_170--Hb_008864_060 Hb_001425_070 Hb_001425_070 Hb_002326_170--Hb_001425_070 Hb_002326_170--Hb_001902_120 Hb_052941_010--Hb_005568_010 Hb_052941_010--Hb_001425_050 Hb_000042_240 Hb_000042_240 Hb_052941_010--Hb_000042_240 Hb_052941_010--Hb_002326_170 Hb_001425_050--Hb_005568_010 Hb_001425_060 Hb_001425_060 Hb_001425_050--Hb_001425_060 Hb_005568_010--Hb_000042_240 Hb_005568_010--Hb_002326_170 Hb_001741_040 Hb_001741_040 Hb_003913_140--Hb_001741_040 Hb_003913_140--Hb_001902_120 Hb_000545_170 Hb_000545_170 Hb_003913_140--Hb_000545_170 Hb_173281_010 Hb_173281_010 Hb_003913_140--Hb_173281_010 Hb_002450_070 Hb_002450_070 Hb_003913_140--Hb_002450_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.261233 0 0.0249294 0.0128505 0.0158778 0.0162565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6474 13.8733 16.5778 0.397915 0.0591369

CAGE analysis