Hb_052941_010

Information

Type -
Description -
Location Contig52941: 438-1254
Sequence    

Annotation

kegg
ID tcc:TCM_019959
description Peroxidase superfamily protein
nr
ID XP_012065221.1
description PREDICTED: probable peroxidase 61 [Jatropha curcas]
swissprot
ID O22862
description Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2
trembl
ID A0A067LH45
description Peroxidase OS=Jatropha curcas GN=JCGZ_20915 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable peroxidase 61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052941_010 0.0 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
2 Hb_005568_010 0.008503733 - - -
3 Hb_001902_120 0.1023938594 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
4 Hb_002045_200 0.1125742922 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
5 Hb_001425_050 0.1360622119 - - -
6 Hb_000042_240 0.1415486549 - - -
7 Hb_002326_170 0.186241926 - - Protein Z, putative [Ricinus communis]
8 Hb_004461_020 0.2041563589 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
9 Hb_010174_070 0.2047333353 - - -
10 Hb_001741_040 0.208898892 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
11 Hb_003913_140 0.2132843996 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
12 Hb_179520_010 0.2248034966 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
13 Hb_108528_010 0.2367206765 - - unnamed protein product [Coffea canephora]
14 Hb_000130_030 0.242266882 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
15 Hb_000617_290 0.2437867228 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002450_070 0.2464313623 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
17 Hb_001425_060 0.24892871 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000363_150 0.2497872016 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
19 Hb_001425_070 0.2511192642 - - -
20 Hb_000322_190 0.2535756013 - - -

Gene co-expression network

sample Hb_052941_010 Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_052941_010--Hb_005568_010 Hb_001902_120 Hb_001902_120 Hb_052941_010--Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_052941_010--Hb_002045_200 Hb_001425_050 Hb_001425_050 Hb_052941_010--Hb_001425_050 Hb_000042_240 Hb_000042_240 Hb_052941_010--Hb_000042_240 Hb_002326_170 Hb_002326_170 Hb_052941_010--Hb_002326_170 Hb_005568_010--Hb_001902_120 Hb_005568_010--Hb_002045_200 Hb_005568_010--Hb_000042_240 Hb_005568_010--Hb_001425_050 Hb_005568_010--Hb_002326_170 Hb_001902_120--Hb_002045_200 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_002045_200--Hb_002326_170 Hb_002045_200--Hb_001425_050 Hb_003913_140 Hb_003913_140 Hb_002045_200--Hb_003913_140 Hb_001425_060 Hb_001425_060 Hb_001425_050--Hb_001425_060 Hb_001425_050--Hb_002326_170 Hb_042223_010 Hb_042223_010 Hb_000042_240--Hb_042223_010 Hb_000042_240--Hb_001902_120 Hb_000042_240--Hb_010174_070 Hb_001741_040 Hb_001741_040 Hb_000042_240--Hb_001741_040 Hb_001276_060 Hb_001276_060 Hb_002326_170--Hb_001276_060 Hb_008864_060 Hb_008864_060 Hb_002326_170--Hb_008864_060 Hb_001425_070 Hb_001425_070 Hb_002326_170--Hb_001425_070 Hb_002326_170--Hb_001902_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186704 0.146647 0.237155 0 0

CAGE analysis