Hb_042223_010

Information

Type -
Description -
Location Contig42223: 308-1095
Sequence    

Annotation

kegg
ID rcu:RCOM_1591990
description Protein Z, putative (EC:2.7.11.1)
nr
ID XP_002510281.1
description Protein Z, putative [Ricinus communis]
swissprot
ID Q9S7T8
description Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1
trembl
ID B9R7I8
description Protein Z, putative OS=Ricinus communis GN=RCOM_1591990 PE=3 SV=1
Gene Ontology
ID GO:0005615
description serpin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042223_010 0.0 - - Protein Z, putative [Ricinus communis]
2 Hb_156473_010 0.1110086831 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
3 Hb_100873_030 0.1547433089 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
4 Hb_000042_240 0.1628015702 - - -
5 Hb_000227_200 0.172919498 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
6 Hb_001587_210 0.1782198072 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
7 Hb_000784_040 0.1796633504 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
8 Hb_000995_070 0.201039686 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_001114_340 0.2063237452 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
10 Hb_001741_040 0.2105771578 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
11 Hb_010174_070 0.2183291598 - - -
12 Hb_003786_090 0.2210057199 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
13 Hb_000856_370 0.2224806437 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
14 Hb_000141_240 0.2247841787 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
15 Hb_000172_570 0.2268520879 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
16 Hb_018954_010 0.2278277675 - - -
17 Hb_001391_140 0.2352580295 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]
18 Hb_064885_080 0.2355719565 - - -
19 Hb_088538_020 0.2384332207 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
20 Hb_008790_050 0.242310336 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_042223_010 Hb_042223_010 Hb_156473_010 Hb_156473_010 Hb_042223_010--Hb_156473_010 Hb_100873_030 Hb_100873_030 Hb_042223_010--Hb_100873_030 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240 Hb_000227_200 Hb_000227_200 Hb_042223_010--Hb_000227_200 Hb_001587_210 Hb_001587_210 Hb_042223_010--Hb_001587_210 Hb_000784_040 Hb_000784_040 Hb_042223_010--Hb_000784_040 Hb_156473_010--Hb_100873_030 Hb_001391_140 Hb_001391_140 Hb_156473_010--Hb_001391_140 Hb_156473_010--Hb_000042_240 Hb_156473_010--Hb_000784_040 Hb_156473_010--Hb_001587_210 Hb_000995_070 Hb_000995_070 Hb_100873_030--Hb_000995_070 Hb_000141_240 Hb_000141_240 Hb_100873_030--Hb_000141_240 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_000009_070 Hb_000009_070 Hb_100873_030--Hb_000009_070 Hb_005568_010 Hb_005568_010 Hb_000042_240--Hb_005568_010 Hb_052941_010 Hb_052941_010 Hb_000042_240--Hb_052941_010 Hb_001902_120 Hb_001902_120 Hb_000042_240--Hb_001902_120 Hb_010174_070 Hb_010174_070 Hb_000042_240--Hb_010174_070 Hb_001741_040 Hb_001741_040 Hb_000042_240--Hb_001741_040 Hb_000227_200--Hb_000784_040 Hb_000227_200--Hb_001587_210 Hb_005914_070 Hb_005914_070 Hb_000227_200--Hb_005914_070 Hb_000227_200--Hb_001741_040 Hb_091433_040 Hb_091433_040 Hb_000227_200--Hb_091433_040 Hb_001587_210--Hb_000784_040 Hb_003786_090 Hb_003786_090 Hb_001587_210--Hb_003786_090 Hb_001587_210--Hb_091433_040 Hb_000450_020 Hb_000450_020 Hb_001587_210--Hb_000450_020 Hb_000784_040--Hb_091433_040 Hb_000784_040--Hb_000995_070 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.454766 0 0.0228477 0.0284317 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28068 3.45763 15.1535 0.20011 0

CAGE analysis