Hb_001391_140

Information

Type -
Description -
Location Contig1391: 164631-168297
Sequence    

Annotation

kegg
ID bdi:104583357
description uncharacterized LOC104583357
nr
ID XP_004293042.2
description PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001391_140 0.0 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]
2 Hb_156473_010 0.2046396354 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
3 Hb_000784_040 0.2336373728 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
4 Hb_042223_010 0.2352580295 - - Protein Z, putative [Ricinus communis]
5 Hb_003599_070 0.2413292725 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_091433_040 0.2589917628 - - PREDICTED: josephin-like protein [Jatropha curcas]
7 Hb_000227_200 0.2595321992 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
8 Hb_000172_570 0.2600841706 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
9 Hb_005914_070 0.2631354484 - - conserved hypothetical protein [Ricinus communis]
10 Hb_018954_010 0.2663047703 - - -
11 Hb_005615_050 0.267963492 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
12 Hb_001587_210 0.2764256097 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
13 Hb_000972_010 0.2791788875 - - PREDICTED: kinesin KP1 [Jatropha curcas]
14 Hb_003786_090 0.2851680987 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
15 Hb_100873_030 0.2881404507 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
16 Hb_000856_370 0.290395771 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
17 Hb_000141_240 0.2931756136 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
18 Hb_000193_240 0.3001375807 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
19 Hb_000103_110 0.3019894907 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
20 Hb_001268_400 0.3027993657 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]

Gene co-expression network

sample Hb_001391_140 Hb_001391_140 Hb_156473_010 Hb_156473_010 Hb_001391_140--Hb_156473_010 Hb_000784_040 Hb_000784_040 Hb_001391_140--Hb_000784_040 Hb_042223_010 Hb_042223_010 Hb_001391_140--Hb_042223_010 Hb_003599_070 Hb_003599_070 Hb_001391_140--Hb_003599_070 Hb_091433_040 Hb_091433_040 Hb_001391_140--Hb_091433_040 Hb_000227_200 Hb_000227_200 Hb_001391_140--Hb_000227_200 Hb_156473_010--Hb_042223_010 Hb_100873_030 Hb_100873_030 Hb_156473_010--Hb_100873_030 Hb_000042_240 Hb_000042_240 Hb_156473_010--Hb_000042_240 Hb_156473_010--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_156473_010--Hb_001587_210 Hb_000784_040--Hb_000227_200 Hb_000784_040--Hb_091433_040 Hb_000995_070 Hb_000995_070 Hb_000784_040--Hb_000995_070 Hb_000784_040--Hb_042223_010 Hb_005914_070 Hb_005914_070 Hb_000784_040--Hb_005914_070 Hb_000784_040--Hb_003599_070 Hb_042223_010--Hb_100873_030 Hb_042223_010--Hb_000042_240 Hb_042223_010--Hb_000227_200 Hb_042223_010--Hb_001587_210 Hb_000141_030 Hb_000141_030 Hb_003599_070--Hb_000141_030 Hb_000368_060 Hb_000368_060 Hb_003599_070--Hb_000368_060 Hb_000972_010 Hb_000972_010 Hb_003599_070--Hb_000972_010 Hb_000103_110 Hb_000103_110 Hb_003599_070--Hb_000103_110 Hb_000172_570 Hb_000172_570 Hb_003599_070--Hb_000172_570 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_000227_200--Hb_001587_210 Hb_000227_200--Hb_005914_070 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0456539 0 0.0180905 0 0.0229024 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0523047 0.123409 0.377944 0 0

CAGE analysis