Hb_003599_070

Information

Type -
Description -
Location Contig3599: 106284-110286
Sequence    

Annotation

kegg
ID rcu:RCOM_0446120
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002533396.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGJ1
description Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=2 SV=1
trembl
ID B9T577
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0446120 PE=3 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003599_070 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000141_030 0.1653941357 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
3 Hb_000368_060 0.1663444173 - - thioredoxin H-type 6 [Hevea brasiliensis]
4 Hb_000972_010 0.1775849173 - - PREDICTED: kinesin KP1 [Jatropha curcas]
5 Hb_000103_110 0.188930703 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
6 Hb_000784_040 0.1901434403 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
7 Hb_000172_570 0.1928354427 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
8 Hb_000432_050 0.1929552701 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
9 Hb_000477_080 0.1930677847 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
10 Hb_011360_080 0.1955155032 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_029510_040 0.1964359963 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
12 Hb_001035_070 0.2074860062 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
13 Hb_000111_010 0.2087147814 - - DNA-directed RNA polymerase, putative [Ricinus communis]
14 Hb_005914_070 0.2114848843 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000227_200 0.2117151228 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
16 Hb_013818_060 0.2118600273 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
17 Hb_009314_010 0.2120074384 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_000771_130 0.2125268781 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000562_040 0.2167436129 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
20 Hb_000856_370 0.21693094 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]

Gene co-expression network

sample Hb_003599_070 Hb_003599_070 Hb_000141_030 Hb_000141_030 Hb_003599_070--Hb_000141_030 Hb_000368_060 Hb_000368_060 Hb_003599_070--Hb_000368_060 Hb_000972_010 Hb_000972_010 Hb_003599_070--Hb_000972_010 Hb_000103_110 Hb_000103_110 Hb_003599_070--Hb_000103_110 Hb_000784_040 Hb_000784_040 Hb_003599_070--Hb_000784_040 Hb_000172_570 Hb_000172_570 Hb_003599_070--Hb_000172_570 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_011360_080 Hb_011360_080 Hb_000141_030--Hb_011360_080 Hb_004429_070 Hb_004429_070 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000141_030--Hb_000368_060 Hb_000562_040 Hb_000562_040 Hb_000368_060--Hb_000562_040 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000784_030 Hb_000784_030 Hb_000368_060--Hb_000784_030 Hb_000368_060--Hb_000103_110 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_000368_060--Hb_011360_080 Hb_004871_050 Hb_004871_050 Hb_000972_010--Hb_004871_050 Hb_017124_020 Hb_017124_020 Hb_000972_010--Hb_017124_020 Hb_000972_010--Hb_000103_110 Hb_000120_650 Hb_000120_650 Hb_000972_010--Hb_000120_650 Hb_000120_120 Hb_000120_120 Hb_000972_010--Hb_000120_120 Hb_000157_040 Hb_000157_040 Hb_000972_010--Hb_000157_040 Hb_000103_110--Hb_004324_050 Hb_000103_110--Hb_000562_040 Hb_000103_110--Hb_000784_030 Hb_000103_110--Hb_000141_030 Hb_000103_110--Hb_000157_040 Hb_000227_200 Hb_000227_200 Hb_000784_040--Hb_000227_200 Hb_091433_040 Hb_091433_040 Hb_000784_040--Hb_091433_040 Hb_000995_070 Hb_000995_070 Hb_000784_040--Hb_000995_070 Hb_042223_010 Hb_042223_010 Hb_000784_040--Hb_042223_010 Hb_005914_070 Hb_005914_070 Hb_000784_040--Hb_005914_070 Hb_002073_120 Hb_002073_120 Hb_000172_570--Hb_002073_120 Hb_000172_570--Hb_000227_200 Hb_000172_570--Hb_000141_030 Hb_000172_570--Hb_000995_070 Hb_000172_570--Hb_000784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0629518 0.00652219 0.0117288 0 0.0301475 0.0138381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125754 0.141362 0.484926 0.0392993 0.0300377

CAGE analysis