Hb_000157_040

Information

Type -
Description -
Location Contig157: 23228-26303
Sequence    

Annotation

kegg
ID rcu:RCOM_0965030
description s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase, putative (EC:2.1.1.41)
nr
ID XP_012065597.1
description PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
swissprot
ID Q6ZIX2
description Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1
trembl
ID A0A0D9WWP9
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0008168
description cycloartenol-c-24-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13676: 25916-26237
cDNA
(Sanger)
(ID:Location)		 016_D18.ab1: 25916-26209

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_040 0.0 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
2 Hb_000103_110 0.1496498752 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
3 Hb_099069_010 0.1503142632 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
4 Hb_000270_410 0.158739745 - - -
5 Hb_004324_050 0.1587527892 - - PREDICTED: spermine synthase [Jatropha curcas]
6 Hb_002685_090 0.1593686552 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
7 Hb_000563_560 0.1611960007 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
8 Hb_000120_650 0.1748975648 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
9 Hb_000742_270 0.1762444301 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
10 Hb_002936_050 0.1766855686 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
11 Hb_000972_010 0.1771433389 - - PREDICTED: kinesin KP1 [Jatropha curcas]
12 Hb_000003_840 0.1827953259 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
13 Hb_004048_050 0.1838338212 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
14 Hb_001213_120 0.1843395677 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
15 Hb_002000_110 0.1863101987 - - ASR-like protein 2 [Hevea brasiliensis]
16 Hb_000368_060 0.1886222184 - - thioredoxin H-type 6 [Hevea brasiliensis]
17 Hb_000078_010 0.1921911535 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
18 Hb_007810_030 0.1930036251 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
19 Hb_000545_170 0.1951542872 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
20 Hb_145226_010 0.1953717825 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]

Gene co-expression network

sample Hb_000157_040 Hb_000157_040 Hb_000103_110 Hb_000103_110 Hb_000157_040--Hb_000103_110 Hb_099069_010 Hb_099069_010 Hb_000157_040--Hb_099069_010 Hb_000270_410 Hb_000270_410 Hb_000157_040--Hb_000270_410 Hb_004324_050 Hb_004324_050 Hb_000157_040--Hb_004324_050 Hb_002685_090 Hb_002685_090 Hb_000157_040--Hb_002685_090 Hb_000563_560 Hb_000563_560 Hb_000157_040--Hb_000563_560 Hb_000368_060 Hb_000368_060 Hb_000103_110--Hb_000368_060 Hb_000103_110--Hb_004324_050 Hb_000562_040 Hb_000562_040 Hb_000103_110--Hb_000562_040 Hb_000784_030 Hb_000784_030 Hb_000103_110--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_000103_110--Hb_000141_030 Hb_111648_010 Hb_111648_010 Hb_099069_010--Hb_111648_010 Hb_145226_010 Hb_145226_010 Hb_099069_010--Hb_145226_010 Hb_000078_010 Hb_000078_010 Hb_099069_010--Hb_000078_010 Hb_007810_030 Hb_007810_030 Hb_099069_010--Hb_007810_030 Hb_099069_010--Hb_000270_410 Hb_000270_410--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_000270_410--Hb_000041_070 Hb_004206_030 Hb_004206_030 Hb_000270_410--Hb_004206_030 Hb_002000_110 Hb_002000_110 Hb_000270_410--Hb_002000_110 Hb_012725_110 Hb_012725_110 Hb_000270_410--Hb_012725_110 Hb_000032_040 Hb_000032_040 Hb_000270_410--Hb_000032_040 Hb_002290_040 Hb_002290_040 Hb_004324_050--Hb_002290_040 Hb_004429_070 Hb_004429_070 Hb_004324_050--Hb_004429_070 Hb_004324_050--Hb_000368_060 Hb_012423_050 Hb_012423_050 Hb_004324_050--Hb_012423_050 Hb_001762_060 Hb_001762_060 Hb_004324_050--Hb_001762_060 Hb_002685_090--Hb_000041_070 Hb_015934_020 Hb_015934_020 Hb_002685_090--Hb_015934_020 Hb_002685_090--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050 Hb_000563_560--Hb_000032_040 Hb_000742_270 Hb_000742_270 Hb_000563_560--Hb_000742_270 Hb_000310_030 Hb_000310_030 Hb_000563_560--Hb_000310_030 Hb_000345_030 Hb_000345_030 Hb_000563_560--Hb_000345_030 Hb_002659_040 Hb_002659_040 Hb_000563_560--Hb_002659_040 Hb_148121_010 Hb_148121_010 Hb_000563_560--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.982 8.52425 37.6978 10.0976 113.017 160.691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
696.228 327.451 882.34 39.7192 3.46432

CAGE analysis