Hb_000310_030

Information

Type -
Description -
Location Contig310: 29294-34242
Sequence    

Annotation

kegg
ID cit:102619662
description uncharacterized LOC102619662
nr
ID KDP40404.1
description hypothetical protein JCGZ_03883 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID K7MX01
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005488
description polg_pvcv2 ame: full=genome polyprotein contains: ame: full=movement protein short=mp contains: ame: full=capsid protein short=cp contains: ame: full=aspartic protease short=pr contains: ame: full=reverse transcriptase short=rt

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32812: 34069-34521 , PASA_asmbl_32813: 34786-39648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_030 0.0 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
2 Hb_000032_040 0.1388347155 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
3 Hb_000733_030 0.1431660211 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
4 Hb_000567_170 0.1442265875 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
5 Hb_000563_560 0.148392451 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
6 Hb_010344_040 0.1493393139 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
7 Hb_002119_120 0.1551171271 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
8 Hb_002735_060 0.1592422607 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
9 Hb_003038_180 0.1607026515 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
10 Hb_004738_010 0.1609404795 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
11 Hb_009404_020 0.1624426777 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001616_060 0.1638708085 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
13 Hb_000162_140 0.164265994 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
14 Hb_000032_220 0.1660662908 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
15 Hb_001439_170 0.1669983301 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
16 Hb_104010_010 0.1677231967 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
17 Hb_000419_040 0.1680899505 - - chorismate synthase [Hevea brasiliensis]
18 Hb_001762_060 0.1681363923 - - pantothenate kinase, putative [Ricinus communis]
19 Hb_012522_030 0.1682031982 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_080477_050 0.1686831025 - - hypothetical protein M569_16374 [Genlisea aurea]

Gene co-expression network

sample Hb_000310_030 Hb_000310_030 Hb_000032_040 Hb_000032_040 Hb_000310_030--Hb_000032_040 Hb_000733_030 Hb_000733_030 Hb_000310_030--Hb_000733_030 Hb_000567_170 Hb_000567_170 Hb_000310_030--Hb_000567_170 Hb_000563_560 Hb_000563_560 Hb_000310_030--Hb_000563_560 Hb_010344_040 Hb_010344_040 Hb_000310_030--Hb_010344_040 Hb_002119_120 Hb_002119_120 Hb_000310_030--Hb_002119_120 Hb_011004_010 Hb_011004_010 Hb_000032_040--Hb_011004_010 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_000742_270 Hb_000742_270 Hb_000032_040--Hb_000742_270 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_000032_040--Hb_002119_120 Hb_001349_010 Hb_001349_010 Hb_000733_030--Hb_001349_010 Hb_004650_070 Hb_004650_070 Hb_000733_030--Hb_004650_070 Hb_025087_010 Hb_025087_010 Hb_000733_030--Hb_025087_010 Hb_005000_290 Hb_005000_290 Hb_000733_030--Hb_005000_290 Hb_000809_050 Hb_000809_050 Hb_000733_030--Hb_000809_050 Hb_002897_060 Hb_002897_060 Hb_000733_030--Hb_002897_060 Hb_000212_260 Hb_000212_260 Hb_000567_170--Hb_000212_260 Hb_000069_100 Hb_000069_100 Hb_000567_170--Hb_000069_100 Hb_001616_060 Hb_001616_060 Hb_000567_170--Hb_001616_060 Hb_000028_400 Hb_000028_400 Hb_000567_170--Hb_000028_400 Hb_006831_030 Hb_006831_030 Hb_000567_170--Hb_006831_030 Hb_007021_020 Hb_007021_020 Hb_000567_170--Hb_007021_020 Hb_000563_560--Hb_000032_040 Hb_000563_560--Hb_000742_270 Hb_000345_030 Hb_000345_030 Hb_000563_560--Hb_000345_030 Hb_002659_040 Hb_002659_040 Hb_000563_560--Hb_002659_040 Hb_148121_010 Hb_148121_010 Hb_000563_560--Hb_148121_010 Hb_000333_090 Hb_000333_090 Hb_010344_040--Hb_000333_090 Hb_010172_030 Hb_010172_030 Hb_010344_040--Hb_010172_030 Hb_010344_040--Hb_000567_170 Hb_001912_010 Hb_001912_010 Hb_010344_040--Hb_001912_010 Hb_002214_050 Hb_002214_050 Hb_010344_040--Hb_002214_050 Hb_000922_270 Hb_000922_270 Hb_010344_040--Hb_000922_270 Hb_002119_120--Hb_004738_010 Hb_001439_170 Hb_001439_170 Hb_002119_120--Hb_001439_170 Hb_001863_480 Hb_001863_480 Hb_002119_120--Hb_001863_480 Hb_000487_310 Hb_000487_310 Hb_002119_120--Hb_000487_310 Hb_001711_030 Hb_001711_030 Hb_002119_120--Hb_001711_030 Hb_001437_220 Hb_001437_220 Hb_002119_120--Hb_001437_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.342634 0.0700996 0.0425468 0.0571275 0.457933 0.482927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84014 0.986904 1.10009 0.0791065 0.271935

CAGE analysis