Hb_000563_560

Information

Type -
Description -
Location Contig563: 421142-424092
Sequence    

Annotation

kegg
ID rcu:RCOM_0681600
description hypothetical protein
nr
ID XP_012083966.1
description PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
swissprot
ID Q84WN3
description Bidirectional sugar transporter SWEET17 OS=Arabidopsis thaliana GN=SWEET17 PE=2 SV=2
trembl
ID A0A067JV29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18896 PE=4 SV=1
Gene Ontology
ID GO:0008643
description bidirectional sugar transporter sweet17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48939: 421289-424044 , PASA_asmbl_48940: 421289-424046
cDNA
(Sanger)
(ID:Location)		 002_A09.ab1: 421289-423824 , 005_D20.ab1: 422867-424044 , 005_I21.ab1: 422867-424044 , 027_A13.ab1: 421289-423649 , 042_D19.ab1: 422867-424044 , 042_H20.ab1: 421956-423751 , 050_D14.ab1: 422867-424044

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_560 0.0 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
2 Hb_000032_040 0.1329458174 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
3 Hb_000742_270 0.1462648096 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
4 Hb_000310_030 0.148392451 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
5 Hb_000345_030 0.1496153425 - - REF-like stress related protein 1 [Hevea brasiliensis]
6 Hb_002659_040 0.1497817324 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
7 Hb_148121_010 0.152675377 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000270_410 0.1592020164 - - -
9 Hb_001762_060 0.1607851152 - - pantothenate kinase, putative [Ricinus communis]
10 Hb_000157_040 0.1611960007 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
11 Hb_004324_050 0.1612760632 - - PREDICTED: spermine synthase [Jatropha curcas]
12 Hb_001213_120 0.162287088 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
13 Hb_000162_140 0.1647384872 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
14 Hb_000419_040 0.1649393209 - - chorismate synthase [Hevea brasiliensis]
15 Hb_002685_090 0.165818396 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
16 Hb_001278_050 0.166053898 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_098315_030 0.1663130492 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
18 Hb_004077_030 0.1671265054 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
19 Hb_001741_090 0.1708511995 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
20 Hb_000367_280 0.1714964618 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_560 Hb_000563_560 Hb_000032_040 Hb_000032_040 Hb_000563_560--Hb_000032_040 Hb_000742_270 Hb_000742_270 Hb_000563_560--Hb_000742_270 Hb_000310_030 Hb_000310_030 Hb_000563_560--Hb_000310_030 Hb_000345_030 Hb_000345_030 Hb_000563_560--Hb_000345_030 Hb_002659_040 Hb_002659_040 Hb_000563_560--Hb_002659_040 Hb_148121_010 Hb_148121_010 Hb_000563_560--Hb_148121_010 Hb_011004_010 Hb_011004_010 Hb_000032_040--Hb_011004_010 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_000032_040--Hb_000742_270 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120 Hb_001507_070 Hb_001507_070 Hb_000742_270--Hb_001507_070 Hb_000742_270--Hb_148121_010 Hb_000742_270--Hb_011004_010 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_000310_030--Hb_000032_040 Hb_000733_030 Hb_000733_030 Hb_000310_030--Hb_000733_030 Hb_000567_170 Hb_000567_170 Hb_000310_030--Hb_000567_170 Hb_010344_040 Hb_010344_040 Hb_000310_030--Hb_010344_040 Hb_000310_030--Hb_002119_120 Hb_000345_040 Hb_000345_040 Hb_000345_030--Hb_000345_040 Hb_006132_060 Hb_006132_060 Hb_000345_030--Hb_006132_060 Hb_004077_030 Hb_004077_030 Hb_000345_030--Hb_004077_030 Hb_000419_040 Hb_000419_040 Hb_000345_030--Hb_000419_040 Hb_001584_300 Hb_001584_300 Hb_000345_030--Hb_001584_300 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090 Hb_000424_210 Hb_000424_210 Hb_002659_040--Hb_000424_210 Hb_000162_140 Hb_000162_140 Hb_002659_040--Hb_000162_140 Hb_002659_040--Hb_001762_060 Hb_162275_030 Hb_162275_030 Hb_002659_040--Hb_162275_030 Hb_001427_230 Hb_001427_230 Hb_002659_040--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_002659_040--Hb_000398_160 Hb_001741_090 Hb_001741_090 Hb_148121_010--Hb_001741_090 Hb_148121_010--Hb_001507_070 Hb_001035_040 Hb_001035_040 Hb_148121_010--Hb_001035_040 Hb_148121_010--Hb_001268_080 Hb_148121_010--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92689 0.195391 0.135844 1.85425 5.64112 4.05374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0983 12.1513 21.3536 2.25457 1.32344

CAGE analysis