Hb_001507_070

Information

Type -
Description -
Location Contig1507: 56651-57919
Sequence    

Annotation

kegg
ID rcu:RCOM_0785240
description hypothetical protein
nr
ID XP_002523232.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NPN5
description F-box/kelch-repeat protein At5g26960 OS=Arabidopsis thaliana GN=At5g26960 PE=2 SV=1
trembl
ID B9SB63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0785240 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at5g26960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000742_270 0.0854728121 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
3 Hb_011004_010 0.092217753 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
4 Hb_003371_100 0.0981200027 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_148121_010 0.1097352397 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000215_180 0.1109294703 - - hypothetical protein 17 [Hevea brasiliensis]
7 Hb_000032_040 0.121584427 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
8 Hb_001268_080 0.1234589166 - - catalytic, putative [Ricinus communis]
9 Hb_001604_030 0.1249404115 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
10 Hb_000896_120 0.1288141119 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
11 Hb_000922_100 0.1290560229 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
12 Hb_000175_610 0.1299754946 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
13 Hb_005000_160 0.1304167184 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
14 Hb_000260_580 0.1304473222 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001785_040 0.1313638527 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
16 Hb_078633_010 0.1346250389 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_000613_160 0.135367675 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_003211_050 0.1360021767 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
19 Hb_003050_070 0.1413118026 - - conserved hypothetical protein [Ricinus communis]
20 Hb_104010_010 0.1413279531 - - hypothetical protein JCGZ_26423 [Jatropha curcas]

Gene co-expression network

sample Hb_001507_070 Hb_001507_070 Hb_000742_270 Hb_000742_270 Hb_001507_070--Hb_000742_270 Hb_011004_010 Hb_011004_010 Hb_001507_070--Hb_011004_010 Hb_003371_100 Hb_003371_100 Hb_001507_070--Hb_003371_100 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_000032_040 Hb_000032_040 Hb_001507_070--Hb_000032_040 Hb_000742_270--Hb_148121_010 Hb_000742_270--Hb_000032_040 Hb_000742_270--Hb_011004_010 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_011004_010--Hb_000032_040 Hb_000575_020 Hb_000575_020 Hb_011004_010--Hb_000575_020 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610 Hb_005000_160 Hb_005000_160 Hb_003371_100--Hb_005000_160 Hb_000260_580 Hb_000260_580 Hb_003371_100--Hb_000260_580 Hb_003371_100--Hb_000742_270 Hb_003371_100--Hb_000175_610 Hb_001741_090 Hb_001741_090 Hb_148121_010--Hb_001741_090 Hb_001035_040 Hb_001035_040 Hb_148121_010--Hb_001035_040 Hb_148121_010--Hb_001268_080 Hb_148121_010--Hb_000032_040 Hb_183086_040 Hb_183086_040 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6 2.31078 2.66997 10.9348 5.58171 8.78314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.9626 69.7536 55.646 7.40884 3.53307

CAGE analysis