Hb_000575_020

Information

Type -
Description -
Location Contig575: 29206-54302
Sequence    

Annotation

kegg
ID rcu:RCOM_0460580
description copper-transporting atpase paa1, putative (EC:3.6.3.4)
nr
ID XP_012084586.1
description PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SZC9
description Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1
trembl
ID B9SZS1
description Copper-transporting atpase paa1, putative OS=Ricinus communis GN=RCOM_0460580 PE=3 SV=1
Gene Ontology
ID GO:0009570
description copper-transporting atpase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49619: 29186-33344 , PASA_asmbl_49620: 30650-30890 , PASA_asmbl_49621: 36484-43078 , PASA_asmbl_49622: 44163-74877
cDNA
(Sanger)
(ID:Location)		 016_L20.ab1: 29248-32807

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_020 0.0 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
2 Hb_011004_010 0.0965184967 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
3 Hb_004108_090 0.1187717502 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
4 Hb_000032_040 0.1416851244 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
5 Hb_001507_070 0.1440475485 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000742_270 0.1521447943 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
7 Hb_000012_130 0.1579697156 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
8 Hb_000803_050 0.1588316972 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
9 Hb_003371_100 0.1605471292 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_004738_010 0.1619637748 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
11 Hb_001785_040 0.165457727 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
12 Hb_001604_030 0.1668969582 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
13 Hb_003020_310 0.1669925777 - - glycosyltransferase, putative [Ricinus communis]
14 Hb_089100_020 0.1696141171 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
15 Hb_002027_400 0.1696872246 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
16 Hb_001035_040 0.1705627336 - - unnamed protein product [Coffea canephora]
17 Hb_000175_610 0.1732066998 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
18 Hb_002119_120 0.1732494102 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
19 Hb_004218_210 0.1732845047 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
20 Hb_024714_060 0.1759093351 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000575_020 Hb_000575_020 Hb_011004_010 Hb_011004_010 Hb_000575_020--Hb_011004_010 Hb_004108_090 Hb_004108_090 Hb_000575_020--Hb_004108_090 Hb_000032_040 Hb_000032_040 Hb_000575_020--Hb_000032_040 Hb_001507_070 Hb_001507_070 Hb_000575_020--Hb_001507_070 Hb_000742_270 Hb_000742_270 Hb_000575_020--Hb_000742_270 Hb_000012_130 Hb_000012_130 Hb_000575_020--Hb_000012_130 Hb_011004_010--Hb_000032_040 Hb_011004_010--Hb_001507_070 Hb_011004_010--Hb_000742_270 Hb_003371_100 Hb_003371_100 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610 Hb_001369_240 Hb_001369_240 Hb_004108_090--Hb_001369_240 Hb_004108_090--Hb_011004_010 Hb_007520_010 Hb_007520_010 Hb_004108_090--Hb_007520_010 Hb_107504_010 Hb_107504_010 Hb_004108_090--Hb_107504_010 Hb_001035_040 Hb_001035_040 Hb_004108_090--Hb_001035_040 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_000032_040--Hb_000742_270 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120 Hb_001507_070--Hb_000742_270 Hb_001507_070--Hb_003371_100 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_001507_070--Hb_000032_040 Hb_000742_270--Hb_148121_010 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_000012_130--Hb_024714_060 Hb_001439_170 Hb_001439_170 Hb_000012_130--Hb_001439_170 Hb_007594_120 Hb_007594_120 Hb_000012_130--Hb_007594_120 Hb_002027_400 Hb_002027_400 Hb_000012_130--Hb_002027_400 Hb_002759_230 Hb_002759_230 Hb_000012_130--Hb_002759_230 Hb_001160_030 Hb_001160_030 Hb_000012_130--Hb_001160_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1298 2.08826 6.38819 6.9323 5.77448 6.43566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.7058 67.7791 58.9489 5.16865 17.4861

CAGE analysis