Hb_107504_010

Information

Type -
Description -
Location Contig107504: 556-1828
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02322: 421-1724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107504_010 0.0 - - -
2 Hb_001936_140 0.0684977423 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
3 Hb_012799_020 0.1429769731 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_002918_040 0.1801339178 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_004108_090 0.1863027733 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
6 Hb_054074_010 0.1930512346 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
7 Hb_000453_300 0.1956995003 - - latex cystatin [Hevea brasiliensis]
8 Hb_000567_280 0.19890769 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
9 Hb_000258_100 0.2032378662 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004650_100 0.2094515662 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
11 Hb_001369_240 0.215919366 - - -
12 Hb_001304_140 0.2200249514 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
13 Hb_003581_300 0.2212784351 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
14 Hb_007520_010 0.2223562705 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
15 Hb_104010_010 0.2225945534 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
16 Hb_011242_030 0.231157129 - - -
17 Hb_000235_010 0.2339043094 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
18 Hb_010582_010 0.2339377146 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
19 Hb_006570_070 0.2354973774 - - cyclophilin [Hevea brasiliensis]
20 Hb_000566_020 0.2355812416 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]

Gene co-expression network

sample Hb_107504_010 Hb_107504_010 Hb_001936_140 Hb_001936_140 Hb_107504_010--Hb_001936_140 Hb_012799_020 Hb_012799_020 Hb_107504_010--Hb_012799_020 Hb_002918_040 Hb_002918_040 Hb_107504_010--Hb_002918_040 Hb_004108_090 Hb_004108_090 Hb_107504_010--Hb_004108_090 Hb_054074_010 Hb_054074_010 Hb_107504_010--Hb_054074_010 Hb_000453_300 Hb_000453_300 Hb_107504_010--Hb_000453_300 Hb_001936_140--Hb_012799_020 Hb_001936_140--Hb_054074_010 Hb_000567_280 Hb_000567_280 Hb_001936_140--Hb_000567_280 Hb_004650_100 Hb_004650_100 Hb_001936_140--Hb_004650_100 Hb_006570_070 Hb_006570_070 Hb_001936_140--Hb_006570_070 Hb_012799_020--Hb_000453_300 Hb_012799_020--Hb_002918_040 Hb_004209_030 Hb_004209_030 Hb_012799_020--Hb_004209_030 Hb_000792_120 Hb_000792_120 Hb_012799_020--Hb_000792_120 Hb_002918_040--Hb_000453_300 Hb_010174_010 Hb_010174_010 Hb_002918_040--Hb_010174_010 Hb_002918_040--Hb_001936_140 Hb_002918_040--Hb_004650_100 Hb_000575_020 Hb_000575_020 Hb_004108_090--Hb_000575_020 Hb_001369_240 Hb_001369_240 Hb_004108_090--Hb_001369_240 Hb_011004_010 Hb_011004_010 Hb_004108_090--Hb_011004_010 Hb_007520_010 Hb_007520_010 Hb_004108_090--Hb_007520_010 Hb_001035_040 Hb_001035_040 Hb_004108_090--Hb_001035_040 Hb_023386_010 Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_001304_140 Hb_001304_140 Hb_054074_010--Hb_001304_140 Hb_010582_010 Hb_010582_010 Hb_054074_010--Hb_010582_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030 Hb_001507_070 Hb_001507_070 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_104010_010 Hb_104010_010 Hb_000453_300--Hb_104010_010 Hb_000453_300--Hb_004209_030 Hb_003050_070 Hb_003050_070 Hb_000453_300--Hb_003050_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.941 18.9307 77.53 103.202 81.2995 46.0244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1588.58 526.29 202.806 157.285 154.011

CAGE analysis