Hb_002918_040

Information

Type transcription factor
Description TF Family: SBP
Location Contig2918: 43329-47994
Sequence    

Annotation

kegg
ID rcu:RCOM_1674040
description Squamosa promoter-binding protein, putative
nr
ID XP_002509450.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID Q38741
description Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1
trembl
ID B9RBB6
description Squamosa promoter-binding-like protein OS=Ricinus communis GN=RCOM_1674040 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30589: 43362-47972
cDNA
(Sanger)
(ID:Location)		 006_C21.ab1: 43390-47906

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_040 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_107504_010 0.1801339178 - - -
3 Hb_012799_020 0.1814229246 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_000453_300 0.1839465219 - - latex cystatin [Hevea brasiliensis]
5 Hb_010174_010 0.2203726538 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
6 Hb_001936_140 0.2209043305 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
7 Hb_004650_100 0.2220130672 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
8 Hb_001369_240 0.2238520225 - - -
9 Hb_088538_010 0.2245800065 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
10 Hb_000235_010 0.2338904741 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
11 Hb_006745_060 0.2358090963 - - -
12 Hb_115940_010 0.2384499218 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
13 Hb_004209_030 0.239225666 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
14 Hb_028285_030 0.2409705735 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
15 Hb_009838_010 0.2467861161 - - -
16 Hb_000083_090 0.2476829369 - - immunophilin, putative [Ricinus communis]
17 Hb_001434_070 0.2491569627 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
18 Hb_001348_120 0.2499591203 - - Phloem protein 2-B10, putative [Theobroma cacao]
19 Hb_001959_260 0.2503878934 - - -
20 Hb_001579_140 0.2507958697 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_040 Hb_002918_040 Hb_107504_010 Hb_107504_010 Hb_002918_040--Hb_107504_010 Hb_012799_020 Hb_012799_020 Hb_002918_040--Hb_012799_020 Hb_000453_300 Hb_000453_300 Hb_002918_040--Hb_000453_300 Hb_010174_010 Hb_010174_010 Hb_002918_040--Hb_010174_010 Hb_001936_140 Hb_001936_140 Hb_002918_040--Hb_001936_140 Hb_004650_100 Hb_004650_100 Hb_002918_040--Hb_004650_100 Hb_107504_010--Hb_001936_140 Hb_107504_010--Hb_012799_020 Hb_004108_090 Hb_004108_090 Hb_107504_010--Hb_004108_090 Hb_054074_010 Hb_054074_010 Hb_107504_010--Hb_054074_010 Hb_107504_010--Hb_000453_300 Hb_012799_020--Hb_000453_300 Hb_012799_020--Hb_001936_140 Hb_004209_030 Hb_004209_030 Hb_012799_020--Hb_004209_030 Hb_000792_120 Hb_000792_120 Hb_012799_020--Hb_000792_120 Hb_001507_070 Hb_001507_070 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_104010_010 Hb_104010_010 Hb_000453_300--Hb_104010_010 Hb_000453_300--Hb_004209_030 Hb_003050_070 Hb_003050_070 Hb_000453_300--Hb_003050_070 Hb_000120_360 Hb_000120_360 Hb_010174_010--Hb_000120_360 Hb_028285_030 Hb_028285_030 Hb_010174_010--Hb_028285_030 Hb_000235_010 Hb_000235_010 Hb_010174_010--Hb_000235_010 Hb_128524_010 Hb_128524_010 Hb_010174_010--Hb_128524_010 Hb_010174_010--Hb_000792_120 Hb_001936_140--Hb_054074_010 Hb_000567_280 Hb_000567_280 Hb_001936_140--Hb_000567_280 Hb_001936_140--Hb_004650_100 Hb_006570_070 Hb_006570_070 Hb_001936_140--Hb_006570_070 Hb_000922_100 Hb_000922_100 Hb_004650_100--Hb_000922_100 Hb_002659_040 Hb_002659_040 Hb_004650_100--Hb_002659_040 Hb_001700_020 Hb_001700_020 Hb_004650_100--Hb_001700_020 Hb_001427_230 Hb_001427_230 Hb_004650_100--Hb_001427_230 Hb_183086_040 Hb_183086_040 Hb_004650_100--Hb_183086_040 Hb_000007_040 Hb_000007_040 Hb_004650_100--Hb_000007_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75058 1.08765 1.53258 0.107983 0.890892 0.740664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6049 13.434 8.94285 6.64215 3.23271

CAGE analysis