Hb_004650_100

Information

Type -
Description -
Location Contig4650: 91831-92991
Sequence    

Annotation

kegg
ID rcu:RCOM_0867250
description Ubiquitin-fold modifier 1 precursor, putative
nr
ID XP_002519920.1
description Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
swissprot
ID Q9CA23
description Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=3 SV=1
trembl
ID B9S1Q5
description Ubiquitin-fold modifier 1 OS=Ricinus communis GN=RCOM_0867250 PE=3 SV=1
Gene Ontology
ID GO:0006661
description ubiquitin-fold modifier 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44030: 75853-92932
cDNA
(Sanger)
(ID:Location)		 012_D19.ab1: 75853-92932 , 045_H19.ab1: 75853-92932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_100 0.0 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
2 Hb_000922_100 0.1264067727 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
3 Hb_002659_040 0.1351420668 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
4 Hb_001700_020 0.1523550903 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
5 Hb_001427_230 0.1525605394 - - conserved hypothetical protein [Ricinus communis]
6 Hb_183086_040 0.1528283708 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
7 Hb_000007_040 0.1530905958 - - hypothetical protein MIMGU_mgv1a017616mg [Erythranthe guttata]
8 Hb_000215_180 0.1552520604 - - hypothetical protein 17 [Hevea brasiliensis]
9 Hb_001538_100 0.1590323739 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
10 Hb_030565_130 0.1597343761 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
11 Hb_054074_010 0.1598258867 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
12 Hb_004965_070 0.1600941583 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
13 Hb_000700_130 0.1611683821 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
14 Hb_005527_040 0.163244531 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
15 Hb_002107_120 0.1633768222 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
16 Hb_023386_010 0.1637553774 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
17 Hb_000329_330 0.163798843 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
18 Hb_000780_210 0.1665551783 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
19 Hb_003680_070 0.1666221237 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
20 Hb_010560_040 0.1670528167 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]

Gene co-expression network

sample Hb_004650_100 Hb_004650_100 Hb_000922_100 Hb_000922_100 Hb_004650_100--Hb_000922_100 Hb_002659_040 Hb_002659_040 Hb_004650_100--Hb_002659_040 Hb_001700_020 Hb_001700_020 Hb_004650_100--Hb_001700_020 Hb_001427_230 Hb_001427_230 Hb_004650_100--Hb_001427_230 Hb_183086_040 Hb_183086_040 Hb_004650_100--Hb_183086_040 Hb_000007_040 Hb_000007_040 Hb_004650_100--Hb_000007_040 Hb_000922_100--Hb_183086_040 Hb_000215_180 Hb_000215_180 Hb_000922_100--Hb_000215_180 Hb_000896_120 Hb_000896_120 Hb_000922_100--Hb_000896_120 Hb_000329_330 Hb_000329_330 Hb_000922_100--Hb_000329_330 Hb_000722_040 Hb_000722_040 Hb_000922_100--Hb_000722_040 Hb_001545_060 Hb_001545_060 Hb_000922_100--Hb_001545_060 Hb_000424_210 Hb_000424_210 Hb_002659_040--Hb_000424_210 Hb_000162_140 Hb_000162_140 Hb_002659_040--Hb_000162_140 Hb_001762_060 Hb_001762_060 Hb_002659_040--Hb_001762_060 Hb_162275_030 Hb_162275_030 Hb_002659_040--Hb_162275_030 Hb_002659_040--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_002659_040--Hb_000398_160 Hb_026048_070 Hb_026048_070 Hb_001700_020--Hb_026048_070 Hb_001016_090 Hb_001016_090 Hb_001700_020--Hb_001016_090 Hb_000163_130 Hb_000163_130 Hb_001700_020--Hb_000163_130 Hb_000780_210 Hb_000780_210 Hb_001700_020--Hb_000780_210 Hb_000389_080 Hb_000389_080 Hb_001700_020--Hb_000389_080 Hb_012265_010 Hb_012265_010 Hb_001700_020--Hb_012265_010 Hb_001307_090 Hb_001307_090 Hb_001427_230--Hb_001307_090 Hb_001427_230--Hb_000722_040 Hb_001427_230--Hb_000398_160 Hb_000648_020 Hb_000648_020 Hb_001427_230--Hb_000648_020 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_124755_010 Hb_124755_010 Hb_001427_230--Hb_124755_010 Hb_183086_040--Hb_000780_210 Hb_183086_040--Hb_000896_120 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_002233_120 Hb_002233_120 Hb_000007_040--Hb_002233_120 Hb_002473_110 Hb_002473_110 Hb_000007_040--Hb_002473_110 Hb_002828_040 Hb_002828_040 Hb_000007_040--Hb_002828_040 Hb_001635_020 Hb_001635_020 Hb_000007_040--Hb_001635_020 Hb_000367_030 Hb_000367_030 Hb_000007_040--Hb_000367_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.6053 8.66815 14.7712 33.523 21.5922 41.869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
256.565 117.146 103.809 69.9358 12.8069

CAGE analysis