Hb_002473_110

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig2473: 116221-119940
Sequence    

Annotation

kegg
ID rcu:RCOM_0410350
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID ABF18929.1
description putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
swissprot
ID Q6YU51
description Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1
trembl
ID A1XP41
description Putative 1-deoxy-D-xylulose 5-phosphate synthase OS=Hevea brasiliensis GN=DXS2 PE=2 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25716: 117244-117659 , PASA_asmbl_25717: 117840-118375 , PASA_asmbl_25718: 118436-119815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002473_110 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
2 Hb_004128_110 0.1516830482 - - glutathione S-transferase L3-like [Jatropha curcas]
3 Hb_000007_040 0.175059069 - - hypothetical protein MIMGU_mgv1a017616mg [Erythranthe guttata]
4 Hb_002636_080 0.1754673326 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
5 Hb_006570_070 0.181642318 - - cyclophilin [Hevea brasiliensis]
6 Hb_004931_100 0.1851597081 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
7 Hb_000318_100 0.1876496145 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
8 Hb_030565_130 0.1882624245 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
9 Hb_001080_280 0.1924477766 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
10 Hb_000424_210 0.1979792003 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
11 Hb_002828_040 0.1988789228 - - transmembrane protein, putative [Medicago truncatula]
12 Hb_084886_010 0.1995150066 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002217_230 0.201087183 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
14 Hb_007432_020 0.201306821 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
15 Hb_000340_320 0.2018456368 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
16 Hb_000345_250 0.2022697342 - - cullin 1-like protein [Hevea brasiliensis]
17 Hb_158092_010 0.2032222379 - - CYP51 [Hevea brasiliensis]
18 Hb_004650_100 0.2042993827 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
19 Hb_020400_050 0.2053413593 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
20 Hb_005285_030 0.2088160382 - - hypothetical protein JCGZ_20905 [Jatropha curcas]

Gene co-expression network

sample Hb_002473_110 Hb_002473_110 Hb_004128_110 Hb_004128_110 Hb_002473_110--Hb_004128_110 Hb_000007_040 Hb_000007_040 Hb_002473_110--Hb_000007_040 Hb_002636_080 Hb_002636_080 Hb_002473_110--Hb_002636_080 Hb_006570_070 Hb_006570_070 Hb_002473_110--Hb_006570_070 Hb_004931_100 Hb_004931_100 Hb_002473_110--Hb_004931_100 Hb_000318_100 Hb_000318_100 Hb_002473_110--Hb_000318_100 Hb_001054_100 Hb_001054_100 Hb_004128_110--Hb_001054_100 Hb_002217_230 Hb_002217_230 Hb_004128_110--Hb_002217_230 Hb_004128_110--Hb_004931_100 Hb_004128_110--Hb_000318_100 Hb_000590_100 Hb_000590_100 Hb_004128_110--Hb_000590_100 Hb_002849_200 Hb_002849_200 Hb_004128_110--Hb_002849_200 Hb_004650_100 Hb_004650_100 Hb_000007_040--Hb_004650_100 Hb_002233_120 Hb_002233_120 Hb_000007_040--Hb_002233_120 Hb_002828_040 Hb_002828_040 Hb_000007_040--Hb_002828_040 Hb_001635_020 Hb_001635_020 Hb_000007_040--Hb_001635_020 Hb_000367_030 Hb_000367_030 Hb_000007_040--Hb_000367_030 Hb_002341_020 Hb_002341_020 Hb_002636_080--Hb_002341_020 Hb_003442_070 Hb_003442_070 Hb_002636_080--Hb_003442_070 Hb_000390_140 Hb_000390_140 Hb_002636_080--Hb_000390_140 Hb_000841_060 Hb_000841_060 Hb_002636_080--Hb_000841_060 Hb_005285_030 Hb_005285_030 Hb_002636_080--Hb_005285_030 Hb_034688_020 Hb_034688_020 Hb_002636_080--Hb_034688_020 Hb_030565_130 Hb_030565_130 Hb_006570_070--Hb_030565_130 Hb_001153_150 Hb_001153_150 Hb_006570_070--Hb_001153_150 Hb_112064_020 Hb_112064_020 Hb_006570_070--Hb_112064_020 Hb_000914_170 Hb_000914_170 Hb_006570_070--Hb_000914_170 Hb_001373_150 Hb_001373_150 Hb_006570_070--Hb_001373_150 Hb_005656_100 Hb_005656_100 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_001005_080 Hb_001005_080 Hb_004931_100--Hb_001005_080 Hb_004931_100--Hb_002217_230 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_000318_100--Hb_000590_100 Hb_020400_050 Hb_020400_050 Hb_000318_100--Hb_020400_050 Hb_000506_120 Hb_000506_120 Hb_000318_100--Hb_000506_120 Hb_001824_010 Hb_001824_010 Hb_000318_100--Hb_001824_010 Hb_000317_410 Hb_000317_410 Hb_000318_100--Hb_000317_410 Hb_008699_020 Hb_008699_020 Hb_000318_100--Hb_008699_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.9705 3.47444 0.808164 10.3384 1.69247 1.42994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.18 9.06688 12.4412 12.3562 2.47925

CAGE analysis