Hb_000318_100

Information

Type transcription factor
Description TF Family: G2-like
Location Contig318: 86570-89097
Sequence    

Annotation

kegg
ID rcu:RCOM_0774170
description hypothetical protein
nr
ID XP_012072452.1
description PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04882 PE=4 SV=1
Gene Ontology
ID GO:0005488
description two-component response regulator-like aprr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33494: 86528-89186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_100 0.0 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
2 Hb_000590_100 0.1084737807 - - -
3 Hb_020400_050 0.1114158642 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
4 Hb_000506_120 0.114053835 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
5 Hb_001824_010 0.1172578073 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
6 Hb_000317_410 0.1269670613 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
7 Hb_008699_020 0.1270286475 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
8 Hb_001832_010 0.1308671439 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
9 Hb_002333_080 0.1346705476 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
10 Hb_011689_040 0.1348015473 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
11 Hb_001277_320 0.1350234489 - - Stem-specific protein TSJT1, putative [Ricinus communis]
12 Hb_004242_080 0.1358281438 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
13 Hb_006869_030 0.13734126 - - ATP binding protein, putative [Ricinus communis]
14 Hb_002685_020 0.1376875775 - - -
15 Hb_030565_130 0.1381161485 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
16 Hb_004128_110 0.1385392023 - - glutathione S-transferase L3-like [Jatropha curcas]
17 Hb_001538_100 0.1390046798 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
18 Hb_000923_050 0.1406144024 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
19 Hb_034350_010 0.1407415724 - - PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
20 Hb_000174_070 0.1427105485 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_100 Hb_000318_100 Hb_000590_100 Hb_000590_100 Hb_000318_100--Hb_000590_100 Hb_020400_050 Hb_020400_050 Hb_000318_100--Hb_020400_050 Hb_000506_120 Hb_000506_120 Hb_000318_100--Hb_000506_120 Hb_001824_010 Hb_001824_010 Hb_000318_100--Hb_001824_010 Hb_000317_410 Hb_000317_410 Hb_000318_100--Hb_000317_410 Hb_008699_020 Hb_008699_020 Hb_000318_100--Hb_008699_020 Hb_154826_010 Hb_154826_010 Hb_000590_100--Hb_154826_010 Hb_000135_060 Hb_000135_060 Hb_000590_100--Hb_000135_060 Hb_000590_100--Hb_001824_010 Hb_001653_020 Hb_001653_020 Hb_000590_100--Hb_001653_020 Hb_002061_040 Hb_002061_040 Hb_000590_100--Hb_002061_040 Hb_000125_190 Hb_000125_190 Hb_020400_050--Hb_000125_190 Hb_000123_170 Hb_000123_170 Hb_020400_050--Hb_000123_170 Hb_002016_100 Hb_002016_100 Hb_020400_050--Hb_002016_100 Hb_000025_120 Hb_000025_120 Hb_020400_050--Hb_000025_120 Hb_020400_050--Hb_002061_040 Hb_012053_070 Hb_012053_070 Hb_020400_050--Hb_012053_070 Hb_000506_120--Hb_020400_050 Hb_002851_020 Hb_002851_020 Hb_000506_120--Hb_002851_020 Hb_000987_120 Hb_000987_120 Hb_000506_120--Hb_000987_120 Hb_000506_120--Hb_008699_020 Hb_000030_290 Hb_000030_290 Hb_000506_120--Hb_000030_290 Hb_008695_040 Hb_008695_040 Hb_001824_010--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_001824_010--Hb_001421_060 Hb_076693_030 Hb_076693_030 Hb_001824_010--Hb_076693_030 Hb_002596_040 Hb_002596_040 Hb_001824_010--Hb_002596_040 Hb_000840_190 Hb_000840_190 Hb_001824_010--Hb_000840_190 Hb_001824_010--Hb_008699_020 Hb_001688_020 Hb_001688_020 Hb_000317_410--Hb_001688_020 Hb_002333_080 Hb_002333_080 Hb_000317_410--Hb_002333_080 Hb_000317_410--Hb_001824_010 Hb_181600_010 Hb_181600_010 Hb_000317_410--Hb_181600_010 Hb_000329_650 Hb_000329_650 Hb_000317_410--Hb_000329_650 Hb_000820_130 Hb_000820_130 Hb_008699_020--Hb_000820_130 Hb_002107_120 Hb_002107_120 Hb_008699_020--Hb_002107_120 Hb_001700_020 Hb_001700_020 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4425 11.1293 3.59231 20.9349 23.9955 16.836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.0396 44.7631 28.7958 37.0982 9.95425

CAGE analysis