Hb_000590_100

Information

Type -
Description -
Location Contig590: 145975-149041
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50202: 143608-148995
cDNA
(Sanger)
(ID:Location)		 051_B17.ab1: 143608-148995

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_100 0.0 - - -
2 Hb_000318_100 0.1084737807 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
3 Hb_154826_010 0.1240840812 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_000135_060 0.1245105813 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
5 Hb_001824_010 0.1311443436 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
6 Hb_001653_020 0.1342253405 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
7 Hb_002061_040 0.134817376 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
8 Hb_000270_370 0.1364745424 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
9 Hb_000189_640 0.1380435217 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
10 Hb_000221_160 0.1404096084 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
11 Hb_006869_030 0.1409745638 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001277_320 0.1413662878 - - Stem-specific protein TSJT1, putative [Ricinus communis]
13 Hb_001054_100 0.1422197794 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
14 Hb_005645_010 0.1424587108 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
15 Hb_004128_110 0.142576873 - - glutathione S-transferase L3-like [Jatropha curcas]
16 Hb_000373_120 0.1429536441 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
17 Hb_020400_050 0.1436686804 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
18 Hb_000028_590 0.1443712231 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
19 Hb_006913_010 0.1445489335 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
20 Hb_002849_200 0.1451865543 - - hypothetical protein JCGZ_15712 [Jatropha curcas]

Gene co-expression network

sample Hb_000590_100 Hb_000590_100 Hb_000318_100 Hb_000318_100 Hb_000590_100--Hb_000318_100 Hb_154826_010 Hb_154826_010 Hb_000590_100--Hb_154826_010 Hb_000135_060 Hb_000135_060 Hb_000590_100--Hb_000135_060 Hb_001824_010 Hb_001824_010 Hb_000590_100--Hb_001824_010 Hb_001653_020 Hb_001653_020 Hb_000590_100--Hb_001653_020 Hb_002061_040 Hb_002061_040 Hb_000590_100--Hb_002061_040 Hb_020400_050 Hb_020400_050 Hb_000318_100--Hb_020400_050 Hb_000506_120 Hb_000506_120 Hb_000318_100--Hb_000506_120 Hb_000318_100--Hb_001824_010 Hb_000317_410 Hb_000317_410 Hb_000318_100--Hb_000317_410 Hb_008699_020 Hb_008699_020 Hb_000318_100--Hb_008699_020 Hb_002471_150 Hb_002471_150 Hb_154826_010--Hb_002471_150 Hb_000227_230 Hb_000227_230 Hb_154826_010--Hb_000227_230 Hb_003683_040 Hb_003683_040 Hb_154826_010--Hb_003683_040 Hb_004800_070 Hb_004800_070 Hb_154826_010--Hb_004800_070 Hb_000009_460 Hb_000009_460 Hb_154826_010--Hb_000009_460 Hb_009793_010 Hb_009793_010 Hb_154826_010--Hb_009793_010 Hb_005736_060 Hb_005736_060 Hb_000135_060--Hb_005736_060 Hb_015807_040 Hb_015807_040 Hb_000135_060--Hb_015807_040 Hb_000135_060--Hb_002061_040 Hb_000331_450 Hb_000331_450 Hb_000135_060--Hb_000331_450 Hb_002284_240 Hb_002284_240 Hb_000135_060--Hb_002284_240 Hb_004724_340 Hb_004724_340 Hb_000135_060--Hb_004724_340 Hb_008695_040 Hb_008695_040 Hb_001824_010--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_001824_010--Hb_001421_060 Hb_076693_030 Hb_076693_030 Hb_001824_010--Hb_076693_030 Hb_002596_040 Hb_002596_040 Hb_001824_010--Hb_002596_040 Hb_000840_190 Hb_000840_190 Hb_001824_010--Hb_000840_190 Hb_001824_010--Hb_008699_020 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_001519_050 Hb_001519_050 Hb_002061_040--Hb_001519_050 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.811314 0.515993 0.234972 1.20414 1.52468 0.762806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3478 2.25565 1.33347 1.9235 0.402886

CAGE analysis