Hb_006570_070

Information

Type -
Description -
Location Contig6570: 46029-46547
Sequence    

Annotation

kegg
ID rcu:RCOM_1598170
description cyclophilin, putative (EC:5.2.1.8)
nr
ID ABZ88806.1
description cyclophilin [Hevea brasiliensis]
swissprot
ID Q39613
description Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=1 SV=1
trembl
ID B3FNQ1
description Peptidyl-prolyl cis-trans isomerase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005774
description peptidyl-prolyl cis-trans isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52784: 45699-46613
cDNA
(Sanger)
(ID:Location)		 001_N04.ab1: 45827-46606 , 001_P05.ab1: 45851-46606 , 002_A08.ab1: 45818-46606 , 008_C23.ab1: 45926-46606 , 024_D24.ab1: 45885-46606 , 033_P19.ab1: 45902-46606 , 034_D06.ab1: 45838-46606 , 036_M07.ab1: 45866-46606 , 049_F24.ab1: 45785-46606 , 051_E16.ab1: 45885-46527

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_070 0.0 - - cyclophilin [Hevea brasiliensis]
2 Hb_030565_130 0.1265933744 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
3 Hb_001153_150 0.1615576634 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
4 Hb_112064_020 0.1647977346 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
5 Hb_000914_170 0.1738885128 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
6 Hb_001373_150 0.1788248926 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
7 Hb_002473_110 0.181642318 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
8 Hb_007002_030 0.1817157502 - - PREDICTED: transmembrane protein 205 [Jatropha curcas]
9 Hb_003207_110 0.1840032715 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
10 Hb_009510_020 0.1860052572 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
11 Hb_004965_070 0.1871650096 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
12 Hb_004738_010 0.1876853022 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
13 Hb_002471_070 0.1896042016 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
14 Hb_003687_150 0.1899080823 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
15 Hb_002471_100 0.189991062 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
16 Hb_000920_150 0.1905002804 - - annexin [Manihot esculenta]
17 Hb_000362_190 0.1908922638 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
18 Hb_000123_170 0.1924987492 - - Rab3 [Hevea brasiliensis]
19 Hb_020400_050 0.1935297143 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
20 Hb_054074_010 0.1936069489 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]

Gene co-expression network

sample Hb_006570_070 Hb_006570_070 Hb_030565_130 Hb_030565_130 Hb_006570_070--Hb_030565_130 Hb_001153_150 Hb_001153_150 Hb_006570_070--Hb_001153_150 Hb_112064_020 Hb_112064_020 Hb_006570_070--Hb_112064_020 Hb_000914_170 Hb_000914_170 Hb_006570_070--Hb_000914_170 Hb_001373_150 Hb_001373_150 Hb_006570_070--Hb_001373_150 Hb_002473_110 Hb_002473_110 Hb_006570_070--Hb_002473_110 Hb_030565_130--Hb_001373_150 Hb_000318_100 Hb_000318_100 Hb_030565_130--Hb_000318_100 Hb_157022_020 Hb_157022_020 Hb_030565_130--Hb_157022_020 Hb_000174_070 Hb_000174_070 Hb_030565_130--Hb_000174_070 Hb_007140_020 Hb_007140_020 Hb_030565_130--Hb_007140_020 Hb_009510_020 Hb_009510_020 Hb_001153_150--Hb_009510_020 Hb_002732_030 Hb_002732_030 Hb_001153_150--Hb_002732_030 Hb_004883_030 Hb_004883_030 Hb_001153_150--Hb_004883_030 Hb_000362_190 Hb_000362_190 Hb_001153_150--Hb_000362_190 Hb_033594_030 Hb_033594_030 Hb_001153_150--Hb_033594_030 Hb_000307_140 Hb_000307_140 Hb_001153_150--Hb_000307_140 Hb_003207_110 Hb_003207_110 Hb_112064_020--Hb_003207_110 Hb_000920_150 Hb_000920_150 Hb_112064_020--Hb_000920_150 Hb_006501_110 Hb_006501_110 Hb_112064_020--Hb_006501_110 Hb_002603_130 Hb_002603_130 Hb_112064_020--Hb_002603_130 Hb_000907_090 Hb_000907_090 Hb_112064_020--Hb_000907_090 Hb_000243_080 Hb_000243_080 Hb_000914_170--Hb_000243_080 Hb_000272_140 Hb_000272_140 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_003687_150 Hb_003687_150 Hb_000914_170--Hb_003687_150 Hb_002260_030 Hb_002260_030 Hb_000914_170--Hb_002260_030 Hb_000046_100 Hb_000046_100 Hb_000914_170--Hb_000046_100 Hb_002301_290 Hb_002301_290 Hb_001373_150--Hb_002301_290 Hb_008554_020 Hb_008554_020 Hb_001373_150--Hb_008554_020 Hb_002235_400 Hb_002235_400 Hb_001373_150--Hb_002235_400 Hb_000184_040 Hb_000184_040 Hb_001373_150--Hb_000184_040 Hb_001373_150--Hb_006501_110 Hb_004128_110 Hb_004128_110 Hb_002473_110--Hb_004128_110 Hb_000007_040 Hb_000007_040 Hb_002473_110--Hb_000007_040 Hb_002636_080 Hb_002636_080 Hb_002473_110--Hb_002636_080 Hb_004931_100 Hb_004931_100 Hb_002473_110--Hb_004931_100 Hb_002473_110--Hb_000318_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1122.14 215.802 193.996 1195.62 317.854 431.574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3953.84 845.609 1174.72 605.332 499.959

CAGE analysis