Hb_004128_110

Information

Type -
Description -
Location Contig4128: 93258-98747
Sequence    

Annotation

kegg
ID rcu:RCOM_0819940
description glutathione-s-transferase omega, putative
nr
ID NP_001295698.1
description glutathione S-transferase L3-like [Jatropha curcas]
swissprot
ID Q9LZ06
description Glutathione S-transferase L3 OS=Arabidopsis thaliana GN=GSTL3 PE=2 SV=1
trembl
ID D6BR66
description Glutathione S-transferase omega OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0005737
description glutathione s-transferase l3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40862: 93260-96484 , PASA_asmbl_40863: 93260-96484
cDNA
(Sanger)
(ID:Location)		 024_B01.ab1: 94643-96484 , 028_D22.ab1: 93656-96484 , 035_H20.ab1: 93436-96484

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_110 0.0 - - glutathione S-transferase L3-like [Jatropha curcas]
2 Hb_001054_100 0.1312439585 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
3 Hb_002217_230 0.1313386307 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
4 Hb_004931_100 0.1347587602 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
5 Hb_000318_100 0.1385392023 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
6 Hb_000590_100 0.142576873 - - -
7 Hb_002849_200 0.1452788033 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
8 Hb_002473_110 0.1516830482 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
9 Hb_007432_020 0.1588241345 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
10 Hb_005527_040 0.1589585988 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
11 Hb_001824_010 0.1594411858 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
12 Hb_020400_050 0.1611760609 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
13 Hb_008699_020 0.161974758 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
14 Hb_000122_020 0.1630920663 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
15 Hb_000692_010 0.1632898879 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
16 Hb_001005_080 0.1647117032 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_143766_010 0.1649064971 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
18 Hb_002600_040 0.1650294237 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
19 Hb_018124_010 0.1654242634 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
20 Hb_030565_130 0.1666175063 - - hypothetical protein JCGZ_01083 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_110 Hb_004128_110 Hb_001054_100 Hb_001054_100 Hb_004128_110--Hb_001054_100 Hb_002217_230 Hb_002217_230 Hb_004128_110--Hb_002217_230 Hb_004931_100 Hb_004931_100 Hb_004128_110--Hb_004931_100 Hb_000318_100 Hb_000318_100 Hb_004128_110--Hb_000318_100 Hb_000590_100 Hb_000590_100 Hb_004128_110--Hb_000590_100 Hb_002849_200 Hb_002849_200 Hb_004128_110--Hb_002849_200 Hb_000122_020 Hb_000122_020 Hb_001054_100--Hb_000122_020 Hb_001824_010 Hb_001824_010 Hb_001054_100--Hb_001824_010 Hb_130235_010 Hb_130235_010 Hb_001054_100--Hb_130235_010 Hb_008695_050 Hb_008695_050 Hb_001054_100--Hb_008695_050 Hb_005307_050 Hb_005307_050 Hb_001054_100--Hb_005307_050 Hb_017491_060 Hb_017491_060 Hb_001054_100--Hb_017491_060 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_001638_230 Hb_001638_230 Hb_002217_230--Hb_001638_230 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_002217_230--Hb_004931_100 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030 Hb_005656_100 Hb_005656_100 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_001005_080 Hb_001005_080 Hb_004931_100--Hb_001005_080 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_000318_100--Hb_000590_100 Hb_020400_050 Hb_020400_050 Hb_000318_100--Hb_020400_050 Hb_000506_120 Hb_000506_120 Hb_000318_100--Hb_000506_120 Hb_000318_100--Hb_001824_010 Hb_000317_410 Hb_000317_410 Hb_000318_100--Hb_000317_410 Hb_008699_020 Hb_008699_020 Hb_000318_100--Hb_008699_020 Hb_154826_010 Hb_154826_010 Hb_000590_100--Hb_154826_010 Hb_000135_060 Hb_000135_060 Hb_000590_100--Hb_000135_060 Hb_000590_100--Hb_001824_010 Hb_001653_020 Hb_001653_020 Hb_000590_100--Hb_001653_020 Hb_002061_040 Hb_002061_040 Hb_000590_100--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_002849_200--Hb_000414_130 Hb_000665_050 Hb_000665_050 Hb_002849_200--Hb_000665_050 Hb_003622_040 Hb_003622_040 Hb_002849_200--Hb_003622_040 Hb_003266_100 Hb_003266_100 Hb_002849_200--Hb_003266_100 Hb_000820_090 Hb_000820_090 Hb_002849_200--Hb_000820_090 Hb_000258_260 Hb_000258_260 Hb_002849_200--Hb_000258_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6575 5.10761 8.33263 32.3278 15.4806 7.05269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.8119 44.0566 31.8423 40.9406 7.69593

CAGE analysis