Hb_001638_230

Information

Type -
Description -
Location Contig1638: 180594-182259
Sequence    

Annotation

kegg
ID rcu:RCOM_1339600
description RNA-binding region-containing protein, putative
nr
ID XP_002515069.1
description RNA-binding region-containing protein, putative [Ricinus communis]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID B9RNJ8
description RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339600 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15008: 180616-180740 , PASA_asmbl_15009: 180744-181851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_230 0.0 - - RNA-binding region-containing protein, putative [Ricinus communis]
2 Hb_002217_230 0.1241548495 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
3 Hb_158092_010 0.1358292615 - - CYP51 [Hevea brasiliensis]
4 Hb_004800_100 0.1388032094 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002681_200 0.1399206595 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
6 Hb_000108_070 0.1495768881 - - alpha-tubulin 1 [Hevea brasiliensis]
7 Hb_189216_030 0.1515308016 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
8 Hb_005285_030 0.1516099818 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
9 Hb_000934_190 0.154009673 - - SER/ARG-rich protein 34A [Theobroma cacao]
10 Hb_009620_020 0.1551436823 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000340_310 0.1555233965 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
12 Hb_005098_030 0.1562323218 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
13 Hb_003462_120 0.1571088874 - - Acidic endochitinase [Theobroma cacao]
14 Hb_000457_210 0.1577369531 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
15 Hb_036790_020 0.1629864836 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
16 Hb_008226_080 0.1633834075 - - Protein LRP16, putative [Ricinus communis]
17 Hb_000174_210 0.1645184674 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
18 Hb_000300_430 0.1647135623 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
19 Hb_003622_040 0.1648176391 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
20 Hb_003972_080 0.1652533154 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_230 Hb_001638_230 Hb_002217_230 Hb_002217_230 Hb_001638_230--Hb_002217_230 Hb_158092_010 Hb_158092_010 Hb_001638_230--Hb_158092_010 Hb_004800_100 Hb_004800_100 Hb_001638_230--Hb_004800_100 Hb_002681_200 Hb_002681_200 Hb_001638_230--Hb_002681_200 Hb_000108_070 Hb_000108_070 Hb_001638_230--Hb_000108_070 Hb_189216_030 Hb_189216_030 Hb_001638_230--Hb_189216_030 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_004931_100 Hb_004931_100 Hb_002217_230--Hb_004931_100 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030 Hb_003462_120 Hb_003462_120 Hb_158092_010--Hb_003462_120 Hb_001377_420 Hb_001377_420 Hb_158092_010--Hb_001377_420 Hb_001080_280 Hb_001080_280 Hb_158092_010--Hb_001080_280 Hb_000731_260 Hb_000731_260 Hb_158092_010--Hb_000731_260 Hb_148209_010 Hb_148209_010 Hb_158092_010--Hb_148209_010 Hb_000252_100 Hb_000252_100 Hb_004800_100--Hb_000252_100 Hb_004627_030 Hb_004627_030 Hb_004800_100--Hb_004627_030 Hb_000300_430 Hb_000300_430 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_000608_050 Hb_000608_050 Hb_002681_200--Hb_000608_050 Hb_000392_340 Hb_000392_340 Hb_002681_200--Hb_000392_340 Hb_148121_040 Hb_148121_040 Hb_002681_200--Hb_148121_040 Hb_005765_050 Hb_005765_050 Hb_002681_200--Hb_005765_050 Hb_002863_030 Hb_002863_030 Hb_002681_200--Hb_002863_030 Hb_005054_210 Hb_005054_210 Hb_002681_200--Hb_005054_210 Hb_001014_040 Hb_001014_040 Hb_000108_070--Hb_001014_040 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_000130_050 Hb_000130_050 Hb_000108_070--Hb_000130_050 Hb_002660_070 Hb_002660_070 Hb_000108_070--Hb_002660_070 Hb_001811_030 Hb_001811_030 Hb_000108_070--Hb_001811_030 Hb_000120_960 Hb_000120_960 Hb_000108_070--Hb_000120_960 Hb_003994_190 Hb_003994_190 Hb_189216_030--Hb_003994_190 Hb_000211_030 Hb_000211_030 Hb_189216_030--Hb_000211_030 Hb_002374_080 Hb_002374_080 Hb_189216_030--Hb_002374_080 Hb_007044_120 Hb_007044_120 Hb_189216_030--Hb_007044_120 Hb_009620_020 Hb_009620_020 Hb_189216_030--Hb_009620_020 Hb_020025_040 Hb_020025_040 Hb_189216_030--Hb_020025_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.88562 0.511142 1.07073 1.7815 0.226669 0.217728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70783 1.62091 2.45103 1.60675 0.281596

CAGE analysis