Hb_001377_420

Information

Type -
Description -
Location Contig1377: 391239-391493
Sequence    

Annotation

kegg
ID rcu:RCOM_0716650
description hypothetical protein
nr
ID XP_002523315.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBE6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_420 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_158092_010 0.1285709692 - - CYP51 [Hevea brasiliensis]
3 Hb_001242_050 0.1405691524 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005496_090 0.141258379 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
5 Hb_000928_110 0.14367846 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
6 Hb_005356_040 0.1443392103 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_003462_120 0.1457813308 - - Acidic endochitinase [Theobroma cacao]
8 Hb_000731_260 0.1474059138 - - hypothetical protein RCOM_0905090 [Ricinus communis]
9 Hb_130719_010 0.1494779006 - - V-type proton ATPase subunit E [Hevea brasiliensis]
10 Hb_002078_440 0.1500879049 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
11 Hb_000465_270 0.1508710178 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000059_010 0.1514685063 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_083380_010 0.1515347335 - - -
14 Hb_000340_310 0.1530184202 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
15 Hb_004679_050 0.1544482521 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
16 Hb_148209_010 0.1591124204 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_001102_210 0.1645123635 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
18 Hb_000175_030 0.1645883123 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
19 Hb_012163_020 0.1648993218 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
20 Hb_001481_140 0.1652146579 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_420 Hb_001377_420 Hb_158092_010 Hb_158092_010 Hb_001377_420--Hb_158092_010 Hb_001242_050 Hb_001242_050 Hb_001377_420--Hb_001242_050 Hb_005496_090 Hb_005496_090 Hb_001377_420--Hb_005496_090 Hb_000928_110 Hb_000928_110 Hb_001377_420--Hb_000928_110 Hb_005356_040 Hb_005356_040 Hb_001377_420--Hb_005356_040 Hb_003462_120 Hb_003462_120 Hb_001377_420--Hb_003462_120 Hb_158092_010--Hb_003462_120 Hb_001080_280 Hb_001080_280 Hb_158092_010--Hb_001080_280 Hb_001638_230 Hb_001638_230 Hb_158092_010--Hb_001638_230 Hb_000731_260 Hb_000731_260 Hb_158092_010--Hb_000731_260 Hb_148209_010 Hb_148209_010 Hb_158092_010--Hb_148209_010 Hb_000788_060 Hb_000788_060 Hb_001242_050--Hb_000788_060 Hb_001242_050--Hb_005496_090 Hb_000465_270 Hb_000465_270 Hb_001242_050--Hb_000465_270 Hb_075247_010 Hb_075247_010 Hb_001242_050--Hb_075247_010 Hb_001242_050--Hb_158092_010 Hb_130719_010 Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_000056_250 Hb_000056_250 Hb_005496_090--Hb_000056_250 Hb_000016_170 Hb_000016_170 Hb_005496_090--Hb_000016_170 Hb_138585_040 Hb_138585_040 Hb_005496_090--Hb_138585_040 Hb_083380_010 Hb_083380_010 Hb_005496_090--Hb_083380_010 Hb_003291_020 Hb_003291_020 Hb_005496_090--Hb_003291_020 Hb_004800_100 Hb_004800_100 Hb_000928_110--Hb_004800_100 Hb_000928_110--Hb_005356_040 Hb_017131_010 Hb_017131_010 Hb_000928_110--Hb_017131_010 Hb_005488_200 Hb_005488_200 Hb_000928_110--Hb_005488_200 Hb_000700_040 Hb_000700_040 Hb_000928_110--Hb_000700_040 Hb_003376_250 Hb_003376_250 Hb_000928_110--Hb_003376_250 Hb_005356_040--Hb_000465_270 Hb_000007_140 Hb_000007_140 Hb_005356_040--Hb_000007_140 Hb_000110_140 Hb_000110_140 Hb_005356_040--Hb_000110_140 Hb_005356_040--Hb_004800_100 Hb_001504_330 Hb_001504_330 Hb_005356_040--Hb_001504_330 Hb_001481_140 Hb_001481_140 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4893 30.7196 16.6666 107.06 11.9525 11.5005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.1075 96.5583 177.464 48.7626 42.5937

CAGE analysis