Hb_002233_120

Information

Type -
Description -
Location Contig2233: 97994-99591
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_120 0.0 - - -
2 Hb_000007_040 0.1699897134 - - hypothetical protein MIMGU_mgv1a017616mg [Erythranthe guttata]
3 Hb_080477_060 0.1713021649 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005128_040 0.1766566709 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004650_100 0.1810490723 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
6 Hb_030954_020 0.1834680092 - - hypothetical protein RCOM_1330200 [Ricinus communis]
7 Hb_001623_430 0.1865542806 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
8 Hb_000922_100 0.1914886606 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
9 Hb_000012_230 0.1946209577 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
10 Hb_001579_310 0.1949927072 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
11 Hb_001741_090 0.1985212742 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
12 Hb_002014_160 0.2020237183 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor C-1 [Jatropha curcas]
13 Hb_001754_010 0.2025013155 - - translationally controlled tumor protein [Hevea brasiliensis]
14 Hb_148121_010 0.2041126199 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001427_230 0.205291612 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002843_210 0.2059315988 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
17 Hb_012423_050 0.2070323135 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
18 Hb_004994_260 0.2077132695 - - Remorin, putative [Ricinus communis]
19 Hb_152021_010 0.2088248864 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
20 Hb_008841_010 0.2091251185 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]

Gene co-expression network

sample Hb_002233_120 Hb_002233_120 Hb_000007_040 Hb_000007_040 Hb_002233_120--Hb_000007_040 Hb_080477_060 Hb_080477_060 Hb_002233_120--Hb_080477_060 Hb_005128_040 Hb_005128_040 Hb_002233_120--Hb_005128_040 Hb_004650_100 Hb_004650_100 Hb_002233_120--Hb_004650_100 Hb_030954_020 Hb_030954_020 Hb_002233_120--Hb_030954_020 Hb_001623_430 Hb_001623_430 Hb_002233_120--Hb_001623_430 Hb_000007_040--Hb_004650_100 Hb_002473_110 Hb_002473_110 Hb_000007_040--Hb_002473_110 Hb_002828_040 Hb_002828_040 Hb_000007_040--Hb_002828_040 Hb_001635_020 Hb_001635_020 Hb_000007_040--Hb_001635_020 Hb_000367_030 Hb_000367_030 Hb_000007_040--Hb_000367_030 Hb_080477_060--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_080477_060--Hb_009659_020 Hb_002260_020 Hb_002260_020 Hb_080477_060--Hb_002260_020 Hb_000091_100 Hb_000091_100 Hb_080477_060--Hb_000091_100 Hb_080477_060--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_080477_060--Hb_007520_060 Hb_003106_140 Hb_003106_140 Hb_005128_040--Hb_003106_140 Hb_000012_230 Hb_000012_230 Hb_005128_040--Hb_000012_230 Hb_002805_290 Hb_002805_290 Hb_005128_040--Hb_002805_290 Hb_002000_110 Hb_002000_110 Hb_005128_040--Hb_002000_110 Hb_012423_050 Hb_012423_050 Hb_005128_040--Hb_012423_050 Hb_000922_100 Hb_000922_100 Hb_004650_100--Hb_000922_100 Hb_002659_040 Hb_002659_040 Hb_004650_100--Hb_002659_040 Hb_001700_020 Hb_001700_020 Hb_004650_100--Hb_001700_020 Hb_001427_230 Hb_001427_230 Hb_004650_100--Hb_001427_230 Hb_183086_040 Hb_183086_040 Hb_004650_100--Hb_183086_040 Hb_030954_020--Hb_009659_020 Hb_030954_020--Hb_001623_430 Hb_030954_020--Hb_183086_040 Hb_003349_070 Hb_003349_070 Hb_030954_020--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_030954_020--Hb_000106_100 Hb_001623_430--Hb_003349_070 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_001623_430--Hb_000922_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34773 0.332631 0 2.65273 0.471885 3.50912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5464 5.50607 5.48822 2.07153 0

CAGE analysis