Hb_000012_230

Information

Type -
Description -
Location Contig12: 319897-322039
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018217mg
description hypothetical protein
nr
ID XP_012066908.1
description PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M5WQH4
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018217mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06003: 319055-319854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_230 0.0 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
2 Hb_004077_030 0.1004568353 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
3 Hb_012423_050 0.1305804933 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
4 Hb_001935_030 0.1313326744 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001473_120 0.1359714424 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_001584_300 0.1447575737 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
7 Hb_009265_060 0.1449303086 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
8 Hb_148121_010 0.1470970922 - - conserved hypothetical protein [Ricinus communis]
9 Hb_094744_010 0.1474406539 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
10 Hb_001213_120 0.1482424996 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
11 Hb_001006_180 0.1507892742 - - PREDICTED: endonuclease V-like [Jatropha curcas]
12 Hb_000398_160 0.153425913 - - GDP-mannose transporter, putative [Ricinus communis]
13 Hb_078633_010 0.1536554111 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
14 Hb_001268_080 0.153830991 - - catalytic, putative [Ricinus communis]
15 Hb_008066_040 0.1558066653 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
16 Hb_001278_050 0.1571695929 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_006831_030 0.1578914272 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
18 Hb_004048_050 0.1592283807 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
19 Hb_000085_250 0.1612761028 - - sodium/hydrogen exchanger, putative [Ricinus communis]
20 Hb_000345_030 0.1614128932 - - REF-like stress related protein 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000012_230 Hb_000012_230 Hb_004077_030 Hb_004077_030 Hb_000012_230--Hb_004077_030 Hb_012423_050 Hb_012423_050 Hb_000012_230--Hb_012423_050 Hb_001935_030 Hb_001935_030 Hb_000012_230--Hb_001935_030 Hb_001473_120 Hb_001473_120 Hb_000012_230--Hb_001473_120 Hb_001584_300 Hb_001584_300 Hb_000012_230--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_000012_230--Hb_009265_060 Hb_000345_030 Hb_000345_030 Hb_004077_030--Hb_000345_030 Hb_004077_030--Hb_001584_300 Hb_004077_030--Hb_009265_060 Hb_004077_030--Hb_012423_050 Hb_002539_080 Hb_002539_080 Hb_004077_030--Hb_002539_080 Hb_001006_180 Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040 Hb_006831_030 Hb_006831_030 Hb_001935_030--Hb_006831_030 Hb_001935_030--Hb_001473_120 Hb_001329_210 Hb_001329_210 Hb_001935_030--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001935_030--Hb_001123_120 Hb_002078_460 Hb_002078_460 Hb_001935_030--Hb_002078_460 Hb_000069_100 Hb_000069_100 Hb_001935_030--Hb_000069_100 Hb_001473_120--Hb_001329_210 Hb_001473_120--Hb_001123_120 Hb_007021_020 Hb_007021_020 Hb_001473_120--Hb_007021_020 Hb_002660_160 Hb_002660_160 Hb_001473_120--Hb_002660_160 Hb_010172_030 Hb_010172_030 Hb_001473_120--Hb_010172_030 Hb_000085_250 Hb_000085_250 Hb_001584_300--Hb_000085_250 Hb_001584_300--Hb_002660_160 Hb_006132_060 Hb_006132_060 Hb_001584_300--Hb_006132_060 Hb_001677_110 Hb_001677_110 Hb_001584_300--Hb_001677_110 Hb_002352_010 Hb_002352_010 Hb_001584_300--Hb_002352_010 Hb_001584_300--Hb_000345_030 Hb_024714_060 Hb_024714_060 Hb_009265_060--Hb_024714_060 Hb_012573_030 Hb_012573_030 Hb_009265_060--Hb_012573_030 Hb_004048_050 Hb_004048_050 Hb_009265_060--Hb_004048_050 Hb_171554_080 Hb_171554_080 Hb_009265_060--Hb_171554_080 Hb_000419_040 Hb_000419_040 Hb_009265_060--Hb_000419_040 Hb_009265_060--Hb_001006_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.230723 0.0237419 0 0.154824 0.0933067 0.227893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.541854 0.468758 0.62521 0.0858017 0

CAGE analysis