Hb_004077_030

Information

Type -
Description -
Location Contig4077: 17522-20799
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04300g
description POPTRDRAFT_255529; hypothetical protein
nr
ID KCW47832.1
description hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
swissprot
ID F4JIK2
description Alpha carbonic anhydrase 4 OS=Arabidopsis thaliana GN=ACA4 PE=3 SV=1
trembl
ID A0A059A104
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01571 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40351: 18699-20734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004077_030 0.0 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
2 Hb_000012_230 0.1004568353 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
3 Hb_000345_030 0.1014158213 - - REF-like stress related protein 1 [Hevea brasiliensis]
4 Hb_001584_300 0.1130863996 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
5 Hb_009265_060 0.1259827819 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_012423_050 0.1321017122 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
7 Hb_002539_080 0.1324260373 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
8 Hb_000085_250 0.1332325473 - - sodium/hydrogen exchanger, putative [Ricinus communis]
9 Hb_148121_010 0.143548191 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002352_010 0.147886273 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
11 Hb_006132_060 0.1491275478 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
12 Hb_002735_060 0.1501310753 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
13 Hb_010589_040 0.1501990945 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001677_110 0.152380561 - - Protein YIPF1, putative [Ricinus communis]
15 Hb_000419_040 0.1526697458 - - chorismate synthase [Hevea brasiliensis]
16 Hb_000345_040 0.157420506 rubber biosynthesis Gene Name: REF4 -
17 Hb_002282_020 0.1588183697 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
18 Hb_001006_180 0.1599385241 - - PREDICTED: endonuclease V-like [Jatropha curcas]
19 Hb_002387_060 0.1600395159 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001762_060 0.1601774079 - - pantothenate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004077_030 Hb_004077_030 Hb_000012_230 Hb_000012_230 Hb_004077_030--Hb_000012_230 Hb_000345_030 Hb_000345_030 Hb_004077_030--Hb_000345_030 Hb_001584_300 Hb_001584_300 Hb_004077_030--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_004077_030--Hb_009265_060 Hb_012423_050 Hb_012423_050 Hb_004077_030--Hb_012423_050 Hb_002539_080 Hb_002539_080 Hb_004077_030--Hb_002539_080 Hb_000012_230--Hb_012423_050 Hb_001935_030 Hb_001935_030 Hb_000012_230--Hb_001935_030 Hb_001473_120 Hb_001473_120 Hb_000012_230--Hb_001473_120 Hb_000012_230--Hb_001584_300 Hb_000012_230--Hb_009265_060 Hb_000345_040 Hb_000345_040 Hb_000345_030--Hb_000345_040 Hb_006132_060 Hb_006132_060 Hb_000345_030--Hb_006132_060 Hb_000419_040 Hb_000419_040 Hb_000345_030--Hb_000419_040 Hb_000345_030--Hb_001584_300 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090 Hb_000085_250 Hb_000085_250 Hb_001584_300--Hb_000085_250 Hb_002660_160 Hb_002660_160 Hb_001584_300--Hb_002660_160 Hb_001584_300--Hb_006132_060 Hb_001677_110 Hb_001677_110 Hb_001584_300--Hb_001677_110 Hb_002352_010 Hb_002352_010 Hb_001584_300--Hb_002352_010 Hb_024714_060 Hb_024714_060 Hb_009265_060--Hb_024714_060 Hb_012573_030 Hb_012573_030 Hb_009265_060--Hb_012573_030 Hb_004048_050 Hb_004048_050 Hb_009265_060--Hb_004048_050 Hb_171554_080 Hb_171554_080 Hb_009265_060--Hb_171554_080 Hb_009265_060--Hb_000419_040 Hb_001006_180 Hb_001006_180 Hb_009265_060--Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_001711_030 Hb_001711_030 Hb_002539_080--Hb_001711_030 Hb_002527_070 Hb_002527_070 Hb_002539_080--Hb_002527_070 Hb_002735_060 Hb_002735_060 Hb_002539_080--Hb_002735_060 Hb_001863_480 Hb_001863_480 Hb_002539_080--Hb_001863_480 Hb_001439_170 Hb_001439_170 Hb_002539_080--Hb_001439_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0122 0.873062 0.743776 12.8589 12.3811 14.9596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.4477 25.558 47.1527 5.54941 0.216478

CAGE analysis